Organism : Bacillus cereus ATCC14579 | Module List :
D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)
Functional Annotations (4)
|D-alanyl-D-alanine carboxypeptidase||cog/ cog|
|cysteine-type endopeptidase activity||go/ molecular_function|
|serine-type D-Ala-D-Ala carboxypeptidase activity||go/ molecular_function|
Regulation information for BC2496(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for BC2496
Module neighborhood information for BC2496
|Gene||Common Name||Description||Module membership|
|BC0022||BC0022||Pyrazinamidase (NCBI ptt file)||9, 256|
|BC0041||BC0041||Corrin/porphyrin methyltransferase (NCBI ptt file)||139, 388|
|BC0212||BC0212||hypothetical protein (NCBI ptt file)||9, 128|
|BC0312||BC0312||UDP-glucose 4-epimerase (NCBI ptt file)||9, 263|
|BC0314||BC0314||Glycosyltransferase (NCBI ptt file)||9, 506|
|BC0374||BC0374||Amidohydrolase amhX (NCBI ptt file)||139, 218|
|BC0460||BC0460||hypothetical protein (NCBI ptt file)||9, 364|
|BC0484||BC0484||hypothetical protein (NCBI ptt file)||9, 25|
|BC0494||BC0494||hypothetical Cytosolic Protein (NCBI ptt file)||85, 139|
|BC0563||BC0563||Biotin carboxyl carrier protein (NCBI ptt file)||9, 85|
|BC0771||BC0771||Protein erfK/srfK precursor (NCBI ptt file)||9, 85|
|BC0820||BC0820||Branched-chain amino acid transport system carrier protein (NCBI ptt file)||139, 197|
|BC0859||BC0859||Oligopeptide-binding protein oppA (NCBI ptt file)||137, 139|
|BC0934||BC0934||hypothetical protein (NCBI ptt file)||9, 85|
|BC1020||BC1020||hypothetical Membrane Associated Protein (NCBI ptt file)||9, 150|
|BC1040||BC1040||hypothetical protein (NCBI ptt file)||9, 146|
|BC1046||BC1046||hypothetical protein (NCBI ptt file)||9, 489|
|BC1130||BC1130||hypothetical protein (NCBI ptt file)||9, 440|
|BC1230||BC1230||Bacterial Ig-like domain protein (NCBI ptt file)||86, 139|
|BC1231||BC1231||Sodium/proline symporter (NCBI ptt file)||139, 399|
|BC1254||BC1254||hypothetical protein (NCBI ptt file)||9, 428|
|BC1441||BC1441||Branched-chain amino acid transport system carrier protein (NCBI ptt file)||139, 412|
|BC1678||BC1678||JEMB (NCBI ptt file)||9, 123|
|BC1817||BC1817||CAAX amino terminal protease family (NCBI ptt file)||86, 139|
|BC1848||BC1848||Prophage helix-turn-helix protein (NCBI ptt file)||9, 85|
|BC1935||BC1935||hypothetical protein (NCBI ptt file)||9, 85|
|BC2094||BC2094||Acetyltransferase (NCBI ptt file)||137, 139|
|BC2115||BC2115||Transglutaminase-like enzymes, hypothetical cysteine proteases (NCBI ptt file)||9, 225|
|BC2160||BC2160||hypothetical protein (NCBI ptt file)||139, 517|
|BC2379||BC2379||Transcriptional regulator (NCBI ptt file)||9, 85|
|BC2464||BC2464||S-layer protein / Peptidoglycan endo-beta-N-acetylglucosaminidase (NCBI ptt file)||139, 517|
|BC2496||BC2496||D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)||9, 139|
|BC2620||BC2620||Penicillin-binding protein transpeptidase (NCBI ptt file)||9, 141|
|BC2715||BC2715||hypothetical Membrane Spanning Protein (NCBI ptt file)||139, 175|
|BC2742||BC2742||Transcriptional regulator, GntR family (NCBI ptt file)||9, 453|
|BC2857||BC2857||hypothetical protein (NCBI ptt file)||9, 416|
|BC3075||BC3075||EpiH/GdmH-related protein (NCBI ptt file)||75, 139|
|BC3105||BC3105||Transcriptional regulator, AraC family (NCBI ptt file)||9, 141|
|BC3117||BC3117||Arsenical pump membrane protein (NCBI ptt file)||139, 341|
|BC3120||BC3120||Succinoglycan biosynthesis protein (NCBI ptt file)||9, 341|
|BC3146||BC3146||Peptidoglycan N-acetylglucosamine deacetylase (NCBI ptt file)||9, 428|
|BC3301||BC3301||hypothetical Cytosolic Protein (NCBI ptt file)||9, 230|
|BC3434||BC3434||Transcriptional regulator, DeoR family (NCBI ptt file)||9, 85|
|BC3514||BC3514||Glucose-1-phosphate cytidylyltransferase (NCBI ptt file)||9, 487|
|BC3524||BC3524||S-layer protein / N-acetylmuramoyl-L-alanine amidase (NCBI ptt file)||67, 139|
|BC3703||BC3703||Phage protein (NCBI ptt file)||9, 141|
|BC3788||BC3788||Nucleoside transport system permease protein (NCBI ptt file)||139, 234|
|BC3893||lspA||lipoprotein signal peptidase (RefSeq)||139, 192|
|BC4010||BC4010||Transcriptional regulator, LacI family (NCBI ptt file)||139, 432|
|BC4121||BC4121||Tyrosine transporter (NCBI ptt file)||139, 412|
|BC4422||BC4422||Nicotinate-nucleotide pyrophosphorylase [carboxylating] (NCBI ptt file)||9, 55|
|BC4449||BC4449||hypothetical Membrane Spanning Protein (NCBI ptt file)||139, 464|
|BC4617||BC4617||hypothetical Membrane Spanning Protein (NCBI ptt file)||9, 141|
|BC4852||BC4852||hypothetical protein (NCBI ptt file)||139, 415|
|BC5051||BC5051||Sodium/proton-dependent alanine carrier protein (NCBI ptt file)||139, 213|
|BC5062||BC5062||Tyrosyl-tRNA synthetase (NCBI ptt file)||139, 297|
|BC5302||BC5302||Sensory box/GGDEF family protein (NCBI ptt file)||139, 321|
|BC5350||BC5350||Transcriptional activator plcR (NCBI ptt file)||139, 506|
|BC5366||BC5366||Muramoyltetrapeptide carboxypeptidase (NCBI ptt file)||139, 218|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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