Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC1911(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for BC1911
Module neighborhood information for BC1911
|Gene||Common Name||Description||Module membership|
|BC0823||BC0823||CotJA protein (NCBI ptt file)||26, 334|
|BC0878||BC0878||IG hypothetical 16724 (NCBI ptt file)||17, 334|
|BC0904||BC0904||hypothetical protein (NCBI ptt file)||17, 334|
|BC1429||BC1429||hypothetical protein (NCBI ptt file)||128, 334|
|BC1573||BC1573||hypothetical protein (NCBI ptt file)||186, 334|
|BC1805||BC1805||hypothetical protein (NCBI ptt file)||186, 334|
|BC1808||BC1808||hypothetical protein (NCBI ptt file)||186, 334|
|BC1894||BC1894||Phage protein (NCBI ptt file)||272, 334|
|BC1905||BC1905||Phage protein (NCBI ptt file)||232, 334|
|BC1909||BC1909||XpaF1 protein (NCBI ptt file)||205, 496|
|BC1910||BC1910||holin (NCBI ptt file)||144, 205|
|BC1911||BC1911||N-acetylmuramoyl-L-alanine amidase (NCBI ptt file)||205, 334|
|BC1928||BC1928||Branched-chain amino acid transport ATP-binding protein livG (NCBI ptt file)||334, 520|
|BC2007||BC2007||hypothetical protein (NCBI ptt file)||186, 334|
|BC2010||BC2010||hypothetical Membrane Spanning Protein (NCBI ptt file)||334, 463|
|BC2091||BC2091||hypothetical protein (NCBI ptt file)||186, 334|
|BC2149||BC2149||hypothetical protein (NCBI ptt file)||334, 417|
|BC2383||BC2383||Oxalate decarboxylase (NCBI ptt file)||272, 334|
|BC2420||BC2420||Phage-related protein (NCBI ptt file)||178, 205|
|BC2509||BC2509||Sortase (NCBI ptt file)||17, 334|
|BC2573||BC2573||Phage protein (NCBI ptt file)||205, 515|
|BC2712||BC2712||hypothetical protein (NCBI ptt file)||186, 334|
|BC2753||BC2753||Cell wall hydrolase cwlJ (NCBI ptt file)||334, 459|
|BC2875||BC2875||hypothetical protein (NCBI ptt file)||334, 339|
|BC2962||BC2962||Sugar transport system permease protein (NCBI ptt file)||199, 334|
|BC2981||BC2981||hypothetical protein (NCBI ptt file)||146, 334|
|BC3234||BC3234||Glucose/mannose transporter (NCBI ptt file)||205, 519|
|BC3360||BC3360||Methyltransferase (NCBI ptt file)||17, 334|
|BC3393||BC3393||Chloramphenicol resistance protein (NCBI ptt file)||135, 205|
|BC3397||BC3397||hypothetical protein (NCBI ptt file)||186, 334|
|BC3598||BC3598||hypothetical protein (NCBI ptt file)||186, 334|
|BC3733||BC3733||hypothetical protein (NCBI ptt file)||334, 339|
|BC3751||BC3751||hypothetical protein (NCBI ptt file)||334, 339|
|BC4002||BC4002||hypothetical protein (NCBI ptt file)||225, 334|
|BC4070||BC4070||Stage V sporulation protein AA (NCBI ptt file)||131, 334|
|BC4157||BC4157||Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (NCBI ptt file)||205, 277|
|BC4158||BC4158||2-oxoisovalerate dehydrogenase beta subunit (NCBI ptt file)||205, 277|
|BC4159||BC4159||2-oxoisovalerate dehydrogenase alpha subunit (NCBI ptt file)||205, 277|
|BC4160||BC4160||Dihydrolipoamide dehydrogenase (NCBI ptt file)||205, 277|
|BC4161||BC4161||Branched-chain-fatty-acid kinase (NCBI ptt file)||205, 277|
|BC4162||BC4162||Leucine dehydrogenase (NCBI ptt file)||205, 277|
|BC4163||BC4163||Phosphate butyryltransferase (NCBI ptt file)||205, 277|
|BC4171||BC4171||hypothetical protein (NCBI ptt file)||17, 334|
|BC4237||BC4237||ComG operon protein 3 (NCBI ptt file)||205, 321|
|BC4238||BC4238||ComG operon protein 2 (NCBI ptt file)||135, 205|
|BC4239||BC4239||ComG operon protein 1 (NCBI ptt file)||135, 205|
|BC4251||BC4251||5-methyltetrahydrofolate--homocysteine methyltransferase (NCBI ptt file)||205, 338|
|BC4252||BC4252||hypothetical protein (NCBI ptt file)||184, 205|
|BC4591||BC4591||MaoC family protein (NCBI ptt file)||199, 334|
|BC4595||BC4595||hypothetical protein (NCBI ptt file)||186, 334|
|BC4635||BC4635||hypothetical protein (NCBI ptt file)||128, 334|
|BC4731||BC4731||Spore germination protein IA (NCBI ptt file)||136, 205|
|BC4732||BC4732||Spore germination protein IB (NCBI ptt file)||136, 205|
|BC4733||BC4733||Spore germination protein IC (NCBI ptt file)||205, 223|
|BC4960||BC4960||Transcriptional regulator, DeoR family (NCBI ptt file)||30, 334|
|BC5134||BC5134||Inosine-uridine preferring nucleoside hydrolase (NCBI ptt file)||186, 334|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
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