Organism : Bacillus subtilis | Module List :
Regulation information for BSU04510(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU04510
|Gene||Common Name||Description||Module membership|
|BSU00200||yaaK||hypothetical protein (RefSeq)||188, 233|
|BSU02500||ycbG||transcriptional regulator (GntR family) (RefSeq)||233, 293|
|BSU03240||ycgQ||hypothetical protein (RefSeq)||150, 233|
|BSU03250||ycgR||putative permease (RefSeq)||89, 233|
|BSU03290||nasE||assimilatory nitrite reductase subunit (RefSeq)||189, 405|
|BSU03300||nasD||assimilatory nitrite reductase subunit (RefSeq)||189, 405|
|BSU04240||ydzA||hypothetical protein (RefSeq)||22, 189|
|BSU04510||ydbL||hypothetical protein (RefSeq)||189, 233|
|BSU05320||ydeS||putative transcriptional regulator (TetR/AcrR family) (RefSeq)||233, 255|
|BSU06390||yebD||hypothetical protein (RefSeq)||189, 295|
|BSU06560||yerA||putative amidohydrolase (RefSeq)||131, 189|
|BSU06860||yezE||putative transcriptional regulator (TetR family) (RefSeq)||233, 361|
|BSU09080||yhcH||putative ABC transporter (ATP-binding protein) (RefSeq)||150, 233|
|BSU10120||hemE||uroporphyrinogen decarboxylase (RefSeq)||188, 189|
|BSU10130||hemH||ferrochelatase (RefSeq)||188, 189|
|BSU10140||hemY||protoporphyrinogen oxidase (RefSeq)||188, 189|
|BSU12080||ctaO||protoheme IX farnesyltransferase (heme O synthase) (RefSeq)||96, 189|
|BSU12910||proG||pyrroline-5-carboxylate reductase (RefSeq)||233, 323|
|BSU14870||ctaA||heme-A synthase (RefSeq)||51, 189|
|BSU18170||yngA||putative conserved membrane protein (RefSeq)||168, 189|
|BSU23110||resE||two-component sensor histidine kinase (RefSeq)||189, 340|
|BSU23120||resD||two-component response regulator (RefSeq)||189, 340|
|BSU23760||coaA||pantothenate kinase (RefSeq)||116, 233|
|BSU23840||yqjK||ribonuclease Z (RefSeq)||102, 233|
|BSU24520||mntR||manganese transport transcriptional regulator (RefSeq)||233, 292|
|BSU25220||antE||hypothetical protein (RefSeq)||205, 233|
|BSU26890||csn||chitosanase (RefSeq)||189, 208|
|BSU27830||coxA||spore cortex protein (RefSeq)||233, 322|
|BSU31500||yuxK||hypothetical protein (RefSeq)||233, 402|
|BSU31790||yueG||putative spore germination protein (RefSeq)||233, 365|
|BSU32110||yumC||ferredoxin-NADP+ reductase (RefSeq)||177, 233|
|BSU32660||yurT||putative methylglyoxalase (RefSeq)||50, 233|
|BSU33630||secG||preprotein translocase subunit SecG (RefSeq)||233, 393|
|BSU35270||cccB||cytochrome c551 (RefSeq)||189, 315|
|BSU36110||ywrC||putative transcriptional regulator (Lrp/AsnC family) (RefSeq)||233, 327|
|BSU36120||ywrB||putative anion transporter (RefSeq)||233, 409|
|BSU36950||ywlC||putative ribosome maturation factor; RNA binding protein (RefSeq)||37, 233|
|BSU37310||fnr||transcriptional regulator (FNR/CAP family) (RefSeq)||22, 189|
|BSU37350||sboA||subtilosin A (RefSeq)||26, 189|
|BSU37360||sboX||putative bacteriocin-like product (RefSeq)||189, 201|
|BSU37370||albA||putative antilisterial bacteriocin (subtilosin) production enzyme (RefSeq)||189, 241|
|BSU37380||albB||putative membrane component involved in subtilosin production (RefSeq)||189, 241|
|BSU37930||ywdK||hypothetical protein (RefSeq)||233, 241|
|BSU38730||cydD||ABC membrane transporter (ATP-binding protein) required for cytochrome bd function (RefSeq)||189, 349|
|BSU38740||cydC||ABC membrane transporter (ATP-binding protein) required for cytochrome bd function (RefSeq)||189, 349|
|BSU38750||cydB||cytochrome bd ubiquinol oxidase (subunit II) (RefSeq)||189, 349|
|BSU38760||cydA||cytochrome bd ubiquinol oxidase (subunit I) (RefSeq)||178, 189|
|BSU38880||yxjO||putative transcriptional regulator (LysR family) (RefSeq)||167, 233|
|BSU38890||yxjN||putative integral inner membrane protein (RefSeq)||38, 233|
|BSU38900||yxjM||two-component sensor histidine kinase [YxjL] (RefSeq)||89, 233|
|BSU38910||yxjL||two-component response regulator [YxjM] (RefSeq)||11, 233|
|BSU39280||yxxE||hypothetical protein (RefSeq)||124, 233|
|BSU39290||yxxD||hypothetical protein (RefSeq)||124, 233|
|BSU39550||yxeH||putative hydrolase (RefSeq)||116, 233|
|BSU39560||yxeG||putative integral inner membrane protein (RefSeq)||29, 233|
|BSU39570||yxeF||hypothetical protein (RefSeq)||142, 233|
|BSU39940||yxaL||membrane associated protein kinase with beta-propeller domain (RefSeq)||189, 276|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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