Organism : Bacillus subtilis | Module List :
sodium/proton-dependent alanine transporter (RefSeq)
Functional Annotations (5)
|Na+/alanine symporter||cog/ cog|
|sodium:amino acid symporter activity||go/ molecular_function|
|sodium ion transport||go/ biological_process|
Regulation information for BSU27810(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for BSU27810
Module neighborhood information for BSU27810
|Gene||Common Name||Description||Module membership|
|BSU00990||rpmG||50S ribosomal protein L33 (RefSeq)||64, 200|
|BSU01530||cwlD||N-acetylmuramoyl-L-alanine amidase (RefSeq)||33, 304|
|BSU01570||ybaN||polysaccharide deacetylase involved in sporulation (RefSeq)||16, 304|
|BSU01980||skfH||sibling killing effect ; sporulation killing factor biosynthesis and export (RefSeq)||141, 304|
|BSU02240||mpr||extracellular metalloprotease (RefSeq)||257, 304|
|BSU03450||hxlB||6-phospho-3-hexuloisomerase (PHI) (RefSeq)||64, 296|
|BSU03460||hxlA||3-hexulose-6-phosphate synthase (HPS) (RefSeq)||64, 296|
|BSU04020||yczH||putative hydrolase (RefSeq)||64, 145|
|BSU05710||ydhD||spore cortex lytic enzyme (RefSeq)||180, 304|
|BSU07140||yetF||hypothetical protein (RefSeq)||129, 304|
|BSU08980||yhbH||hypothetical protein (RefSeq)||126, 304|
|BSU09540||plsC||1-acylglycerol-phosphate (1-acyl-G3P) acyltransferase (RefSeq)||64, 404|
|BSU09600||crcBA||camphor resistance protein CrcB (RefSeq)||64, 115|
|BSU10010||trpP||tryptophan transporter (RefSeq)||64, 94|
|BSU10390||yhfW||putative Rieske [2Fe-2S] oxygenase (RefSeq)||304, 350|
|BSU10880||yisV||putative PLP-dependent transcriptional regulator (RefSeq)||64, 318|
|BSU10990||yitH||putative N-acetyltransferase (RefSeq)||64, 171|
|BSU11000||yitI||putative N-acetyltransferase (RefSeq)||64, 219|
|BSU11270||yjzD||hypothetical protein (RefSeq)||64, 157|
|BSU11280||yjaU||hypothetical protein (RefSeq)||64, 157|
|BSU11480||yjbB||putative exporter (RefSeq)||64, 350|
|BSU11510||yjbE||putative transporter component (RefSeq)||64, 115|
|BSU12050||yjdH||hypothetical protein (RefSeq)||127, 304|
|BSU12500||xkdA||PBSX phage protein, putative peptidase (RefSeq)||64, 96|
|BSU13070||ykkA||hypothetical protein (RefSeq)||64, 171|
|BSU13080||ykkB||putative N-acetyltransferase (RefSeq)||64, 171|
|BSU14320||yknU||putative ABC transporter (ATP-binding protein) (RefSeq)||257, 304|
|BSU14810||ylaK||putative phosphate starvation inducible protein (RefSeq)||16, 304|
|BSU15170||spoVD||penicillin-binding protein (RefSeq)||126, 304|
|BSU15420||divIVA||cell-division initiation protein (RefSeq)||64, 402|
|BSU16720||ymxH||hypothetical protein (RefSeq)||16, 304|
|BSU16980||spoVS||regulator required for dehydratation of the spore core and assembly of the coat (stage V sporulation) (RefSeq)||304, 340|
|BSU17720||yndA||hypothetical protein (RefSeq)||286, 304|
|BSU18620||yoaI||putative 4-hydroxyphenylacetate-3-hydroxylase (RefSeq)||64, 379|
|BSU18690||yoaP||hypothetical protein (RefSeq)||64, 129|
|BSU19090||yobU||putative effector of transcriptional regulator (RefSeq)||64, 239|
|BSU19100||yobV||putative transcriptional regulator (RefSeq)||64, 170|
|BSU21830||ypjQ||putative phosphatidylglycerophosphatase (RefSeq)||64, 404|
|BSU25600||comER||late competence protein ComER (RefSeq)||127, 304|
|BSU26230||yqaP||conserved hypothetical protein; skin element (RefSeq)||25, 64|
|BSU26240||yqaO||conserved hypothetical protein; skin element (RefSeq)||64, 216|
|BSU26780||yrdA||hypothetical protein (RefSeq)||304, 404|
|BSU27310||pbpI||penicillin-binding protein PBP4B (RefSeq)||304, 411|
|BSU27800||yrzH||hypothetical protein (RefSeq)||64, 258|
|BSU27810||yrbD||sodium/proton-dependent alanine transporter (RefSeq)||64, 304|
|BSU29160||ytvI||putative permease (RefSeq)||16, 304|
|BSU29260||ytpI||hypothetical protein (RefSeq)||91, 304|
|BSU30670||luxS||S-ribosylhomocysteinase (RefSeq)||49, 64|
|BSU30680||ytjA||hypothetical protein (RefSeq)||64, 115|
|BSU30950||glgA||glycogen synthase (RefSeq)||126, 304|
|BSU30980||glgB||glycogen branching enzyme (RefSeq)||141, 304|
|BSU31580||maeN||Na+/malate symporter (RefSeq)||64, 238|
|BSU31730||yuzC||inner spore coat protein (RefSeq)||16, 304|
|BSU35880||pgsA||capsular polyglutamate synthetase (RefSeq)||64, 318|
|BSU36320||ywpG||hypothetical protein (RefSeq)||64, 318|
|BSU36550||spoIIQ||forespore protein required for alternative engulfment (RefSeq)||16, 304|
|BSU36750||spoIID||autolysin required for complete dissolution of the asymmetric septum (stage II sporulation) (RefSeq)||220, 304|
|BSU40950||yyaC||hypothetical protein (RefSeq)||16, 304|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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