Organism : Bacillus subtilis | Module List :
Regulation information for BSU10010(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU10010
|Gene||Common Name||Description||Module membership|
|BSU00440||veg||hypothetical protein (RefSeq)||94, 115|
|BSU00990||rpmG||50S ribosomal protein L33 (RefSeq)||64, 200|
|BSU03140||tmrB||ATP-binding tunicamycin resistance protein (RefSeq)||94, 115|
|BSU03150||aroK||shikimate kinase (RefSeq)||94, 115|
|BSU03450||hxlB||6-phospho-3-hexuloisomerase (PHI) (RefSeq)||64, 296|
|BSU03460||hxlA||3-hexulose-6-phosphate synthase (HPS) (RefSeq)||64, 296|
|BSU03880||yczG||putative transcriptional regulator (ArsR family) (RefSeq)||94, 115|
|BSU04020||yczH||putative hydrolase (RefSeq)||64, 145|
|BSU05390||ydfF||putative transcriptional regulator (RefSeq)||94, 116|
|BSU07970||yfjT||hypothetical protein (RefSeq)||94, 157|
|BSU08520||recX||recombination regulator RecX (RefSeq)||94, 258|
|BSU08530||yfhH||hypothetical protein (RefSeq)||94, 270|
|BSU09540||plsC||1-acylglycerol-phosphate (1-acyl-G3P) acyltransferase (RefSeq)||64, 404|
|BSU09600||crcBA||camphor resistance protein CrcB (RefSeq)||64, 115|
|BSU09610||yhdV||integral membrane protein possibly involved in chromosome condensation (RefSeq)||94, 258|
|BSU10010||trpP||tryptophan transporter (RefSeq)||64, 94|
|BSU10880||yisV||putative PLP-dependent transcriptional regulator (RefSeq)||64, 318|
|BSU10990||yitH||putative N-acetyltransferase (RefSeq)||64, 171|
|BSU11000||yitI||putative N-acetyltransferase (RefSeq)||64, 219|
|BSU11270||yjzD||hypothetical protein (RefSeq)||64, 157|
|BSU11280||yjaU||hypothetical protein (RefSeq)||64, 157|
|BSU11480||yjbB||putative exporter (RefSeq)||64, 350|
|BSU11510||yjbE||putative transporter component (RefSeq)||64, 115|
|BSU12500||xkdA||PBSX phage protein, putative peptidase (RefSeq)||64, 96|
|BSU12820||spoIISB||two-component apoptotic control system component B (RefSeq)||94, 215|
|BSU12830||spoIISA||two-component apoptosis factor (RefSeq)||94, 215|
|BSU13070||ykkA||hypothetical protein (RefSeq)||64, 171|
|BSU13080||ykkB||putative N-acetyltransferase (RefSeq)||64, 171|
|BSU13980||pbpH||penicillin-binding enzyme for formation of rod-shaped peptidoglycan cell wall (RefSeq)||70, 94|
|BSU14840||ylaN||hypothetical protein (RefSeq)||94, 310|
|BSU15420||divIVA||cell-division initiation protein (RefSeq)||64, 402|
|BSU18110||ynfC||hypothetical protein (RefSeq)||44, 94|
|BSU18390||yoeC||putative bacteriophage integrase (RefSeq)||94, 157|
|BSU18620||yoaI||putative 4-hydroxyphenylacetate-3-hydroxylase (RefSeq)||64, 379|
|BSU18690||yoaP||hypothetical protein (RefSeq)||64, 129|
|BSU19090||yobU||putative effector of transcriptional regulator (RefSeq)||64, 239|
|BSU19100||yobV||putative transcriptional regulator (RefSeq)||64, 170|
|BSU19300||yozC||hypothetical protein (RefSeq)||94, 215|
|BSU21830||ypjQ||putative phosphatidylglycerophosphatase (RefSeq)||64, 404|
|BSU21910||metA||homoserine O-succinyltransferase (RefSeq)||94, 327|
|BSU22980||ypbG||putative phosphoesterase (RefSeq)||94, 258|
|BSU23040||fer||ferredoxin (RefSeq)||94, 151|
|BSU23230||ypuF||hypothetical protein (RefSeq)||94, 226|
|BSU23240||ypzK||putative acetyltransferase (RefSeq)||94, 208|
|BSU23310||sipS||type I signal peptidase (RefSeq)||94, 159|
|BSU23830||yqjL||putative hydrolase (RefSeq)||94, 217|
|BSU26230||yqaP||conserved hypothetical protein; skin element (RefSeq)||25, 64|
|BSU26240||yqaO||conserved hypothetical protein; skin element (RefSeq)||64, 216|
|BSU26790||aadK||aminoglycoside 6-adenylyltransferase (RefSeq)||94, 404|
|BSU26800||yrpB||putative anionic nitroalkane dioxygenase (RefSeq)||35, 94|
|BSU27800||yrzH||hypothetical protein (RefSeq)||64, 258|
|BSU27810||yrbD||sodium/proton-dependent alanine transporter (RefSeq)||64, 304|
|BSU29000||nrdR||transcriptional regulator NrdR (RefSeq)||94, 270|
|BSU30670||luxS||S-ribosylhomocysteinase (RefSeq)||49, 64|
|BSU30680||ytjA||hypothetical protein (RefSeq)||64, 115|
|BSU31580||maeN||Na+/malate symporter (RefSeq)||64, 238|
|BSU35880||pgsA||capsular polyglutamate synthetase (RefSeq)||64, 318|
|BSU36320||ywpG||hypothetical protein (RefSeq)||64, 318|
|BSU38450||ywaE||putative transcriptional regulator (MarR family) (RefSeq)||94, 341|
|BSU38480||ywaC||(p)ppGpp synthetase (RefSeq)||71, 94|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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