Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0214(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0214
Module neighborhood information for CAC0214
|Gene||Common Name||Description||Module membership|
|CAC0176||appA||Oligopeptide-binding protein, periplasmic component (NCBI ptt file)||22, 318|
|CAC0181||CAC0181||Similar to beta-lactamase (NCBI ptt file)||314, 320|
|CAC0182||CAC0182||Beta-glucosidase homolog (NCBI ptt file)||236, 320|
|CAC0214||CAC0214||Endoglucanase, aminopeptidase M42 family (NCBI ptt file)||22, 320|
|CAC0215||CAC0215||Endoglucanase, aminopeptidase M42 family (NCBI ptt file)||22, 366|
|CAC0253||nifH||Nitrogenase iron protein (nitrogenase component II) gene nifH (NCBI ptt file)||98, 320|
|CAC0436||CAC0436||Predicted xylanase/chitin deacetilase, similar to yxkH B.subtilis (NCBI ptt file)||320, 353|
|CAC0566||CAC0566||Malate dehydrogenase (NCBI ptt file)||14, 22|
|CAC0794||CAC0794||Nucleoside-diphosphate-sugar epimerase (UDP-glucose 4-epimerase) (NCBI ptt file)||98, 320|
|CAC0832||CAC0832||Fusion: transcriptional regulator and conserved domain (NCBI ptt file)||38, 320|
|CAC1094||CAC1094||Cation efflux system protein (NCBI ptt file)||208, 320|
|CAC1290||CAC1290||Uncharacterized protein, homolog of YQFC B.subtilis (NCBI ptt file)||22, 265|
|CAC1291||CAC1291||Uncharacterized protein, YQFD ortholog, related spoIV gene product (NCBI ptt file)||22, 265|
|CAC1341||araD||Ribulose-5-phosphate 4-epimerase family protein (NCBI ptt file)||22, 142|
|CAC1342||araA||L-arabinose isomerase (NCBI ptt file)||22, 142|
|CAC1343||CAC1343||Transketolase (NCBI ptt file)||22, 284|
|CAC1462||CAC1462||Levanase/invertase (NCBI ptt file)||98, 320|
|CAC1512||nirC||Formate/nitrite family of transporter (NCBI ptt file)||240, 320|
|CAC1550||CAC1550||Methionine sulfoxide reductase C-terminal domain related protein, YPPQ ortholog (NCBI ptt file)||179, 320|
|CAC1630||CAC1630||Zn-dependent peptidase from MPP family (NCBI ptt file)||22, 360|
|CAC1647||CAC1647||Hypothetical protein (NCBI ptt file)||244, 320|
|CAC1767||CAC1767||Hypothetical protein (NCBI ptt file)||14, 22|
|CAC1954||CAC1954||Hypothetical protein (NCBI ptt file)||22, 258|
|CAC2099||CAC2099||Hypothetical protein (NCBI ptt file)||270, 320|
|CAC2103||CAC2103||General secretion pathway protein, pilin family (NCBI ptt file)||54, 320|
|CAC2105||CAC2105||General secretion pathway protein E, ATPase (NCBI ptt file)||256, 320|
|CAC2232||recJ||SsDNA Exonuclease, RecJ (NCBI ptt file)||22, 315|
|CAC2303||CAC2303||Stage V sporulation AE, SpoVAE (fragment) (NCBI ptt file)||22, 118|
|CAC2304||SpoVAD||Stage V sporulation AD, SpoVAD (NCBI ptt file)||22, 265|
|CAC2511||CAC2511||Predicted membrane protein (NCBI ptt file)||272, 320|
|CAC2516||CAC2516||Hypothetical protein (NCBI ptt file)||89, 320|
|CAC2569||CAC2569||NimC/NimA family protein (NCBI ptt file)||279, 320|
|CAC2609||CAC2609||Cytidine deaminase family enzyme (NCBI ptt file)||270, 320|
|CAC3274||CAC3274||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||22, 265|
|CAC3275||CAC3275||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||22, 320|
|CAC3304||CAC3304||Hypothetical protein, CF-42 family (NCBI ptt file)||22, 98|
|CAC3337||CAC3337||Predicted amidohodrolase (dihydroorotase family) (NCBI ptt file)||320, 347|
|CAC3375||CAC3375||Alcohol dehydrogenase (NCBI ptt file)||22, 188|
|CAC3439||CAC3439||Uncharacterized conserved membrane protein, YGAE B.subtilis homolog (NCBI ptt file)||144, 320|
|CAC3475||CAC3475||Transcriptional regulator, merR family (NCBI ptt file)||14, 320|
|CAC3543||CAC3543||Predicted membrane protein (NCBI ptt file)||265, 320|
|CAC3654||CAC3654||Heavy-metal binding protein (similar to N-terminal domain of MerA) (NCBI ptt file)||73, 320|
|CAC3678||kdpD||Sensor protein KdpD (ATPase containing sensor domain and histidine kinase domain) (NCBI ptt file)||22, 78|
|CAC3679||kdpX||Uncharacterized protein of kdp operon, kdpX (NCBI ptt file)||22, 78|
|CAC3680||kdpC/atkC||K+-transporting ATPase, c chain (NCBI ptt file)||22, 265|
|CAC3681||kdpB/atkB||K+-transporting ATPase, b chain (NCBI ptt file)||22, 78|
|CAC3682||kdpA/atkA||K+-transporting ATPase, a chain (NCBI ptt file)||22, 265|
|CAC3684||CAC3684||Polygalacturonase (NCBI ptt file)||22, 118|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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