Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1630(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC1630
Module neighborhood information for CAC1630
|Gene||Common Name||Description||Module membership|
|CAC0176||appA||Oligopeptide-binding protein, periplasmic component (NCBI ptt file)||22, 318|
|CAC0214||CAC0214||Endoglucanase, aminopeptidase M42 family (NCBI ptt file)||22, 320|
|CAC0215||CAC0215||Endoglucanase, aminopeptidase M42 family (NCBI ptt file)||22, 366|
|CAC0423||CAC0423||Fusion: PTS system, beta-glucosides specific IIABC component (NCBI ptt file)||284, 360|
|CAC0425||sacA||Sucrase-6-phosphate hydrolase (gene sacA) (NCBI ptt file)||92, 360|
|CAC0566||CAC0566||Malate dehydrogenase (NCBI ptt file)||14, 22|
|CAC0570||CAC0570||PTS enzyme II, ABC component (NCBI ptt file)||237, 360|
|CAC0644||gerKA||Spore germination protein gerKA (NCBI ptt file)||324, 360|
|CAC0766||CAC0766||Predicted transcriptional regulator (MerR family) (NCBI ptt file)||116, 360|
|CAC1290||CAC1290||Uncharacterized protein, homolog of YQFC B.subtilis (NCBI ptt file)||22, 265|
|CAC1291||CAC1291||Uncharacterized protein, YQFD ortholog, related spoIV gene product (NCBI ptt file)||22, 265|
|CAC1341||araD||Ribulose-5-phosphate 4-epimerase family protein (NCBI ptt file)||22, 142|
|CAC1342||araA||L-arabinose isomerase (NCBI ptt file)||22, 142|
|CAC1343||CAC1343||Transketolase (NCBI ptt file)||22, 284|
|CAC1396||purD||Phosphoribosylamine-glycine ligase (NCBI ptt file)||249, 360|
|CAC1595||CAC1595||Integrase/recombinase, XerC/XerD family (NCBI ptt file)||249, 360|
|CAC1630||CAC1630||Zn-dependent peptidase from MPP family (NCBI ptt file)||22, 360|
|CAC1761||CAC1761||Predicted GTPase, YLQF B.subtilis ortholog (NCBI ptt file)||116, 360|
|CAC1767||CAC1767||Hypothetical protein (NCBI ptt file)||14, 22|
|CAC1789||smbA/pyrH||Uridylate kinase (NCBI ptt file)||310, 360|
|CAC1954||CAC1954||Hypothetical protein (NCBI ptt file)||22, 258|
|CAC2232||recJ||SsDNA Exonuclease, RecJ (NCBI ptt file)||22, 315|
|CAC2303||CAC2303||Stage V sporulation AE, SpoVAE (fragment) (NCBI ptt file)||22, 118|
|CAC2304||SpoVAD||Stage V sporulation AD, SpoVAD (NCBI ptt file)||22, 265|
|CAC2617||CAC2617||Membrane associated methyl-chemotaxis protein, HAMP domain containing (NCBI ptt file)||66, 360|
|CAC2626||fabG||Possible 3-ketoacyl-acyl carrier protein reductase (NCBI ptt file)||310, 360|
|CAC2627||CAC2627||Predicted S-adenosylmethionine-dependent methyltransferase, YtmQ B.subtilis ortholog (NCBI ptt file)||310, 360|
|CAC2628||CAC2628||Predicted metal-dependent peptidase (NCBI ptt file)||310, 360|
|CAC2650||pyrD||Dihydroorotate dehydrogenase (NCBI ptt file)||116, 360|
|CAC2652||pyrF||Orotidine-5'-phosphate decarboxylase (NCBI ptt file)||116, 360|
|CAC2653||pyrI||Aspartate carbamoyltransferase regulatory subunit (NCBI ptt file)||116, 360|
|CAC2654||CAC2654||Aspartate carbamoyltransferase catalytic subunit (NCBI ptt file)||116, 360|
|CAC2918||pmi||Mannose-6 phospate isomelase (NCBI ptt file)||270, 360|
|CAC2936||CAC2936||Alpha/beta superfamily hydrolase (NCBI ptt file)||236, 360|
|CAC3095||thiK||Hydroxyethylthiazole kinase ThiM/ThiK (FS!) (NCBI ptt file)||353, 360|
|CAC3274||CAC3274||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||22, 265|
|CAC3275||CAC3275||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||22, 320|
|CAC3304||CAC3304||Hypothetical protein, CF-42 family (NCBI ptt file)||22, 98|
|CAC3332||CAC3332||Predicted amidohydrolase (dihydroorothase family) (NCBI ptt file)||150, 360|
|CAC3356||CAC3356||Lactoylglutathione lyase (LGUL) family protein, diverged (NCBI ptt file)||236, 360|
|CAC3375||CAC3375||Alcohol dehydrogenase (NCBI ptt file)||22, 188|
|CAC3440||CAC3440||Hypothetical protein (NCBI ptt file)||353, 360|
|CAC3678||kdpD||Sensor protein KdpD (ATPase containing sensor domain and histidine kinase domain) (NCBI ptt file)||22, 78|
|CAC3679||kdpX||Uncharacterized protein of kdp operon, kdpX (NCBI ptt file)||22, 78|
|CAC3680||kdpC/atkC||K+-transporting ATPase, c chain (NCBI ptt file)||22, 265|
|CAC3681||kdpB/atkB||K+-transporting ATPase, b chain (NCBI ptt file)||22, 78|
|CAC3682||kdpA/atkA||K+-transporting ATPase, a chain (NCBI ptt file)||22, 265|
|CAC3684||CAC3684||Polygalacturonase (NCBI ptt file)||22, 118|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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