Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0302(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0302
Module neighborhood information for CAC0302
|Gene||Common Name||Description||Module membership|
|CAC0007||gyrA||DNA gyrase (topoisomerase II) A subunit (NCBI ptt file)||29, 278|
|CAC0159||CAC0159||Hypothetical protein (NCBI ptt file)||47, 334|
|CAC0299||CAC0299||Protein from nitrogen regulatory protein P-II (GLNB) family, ortholog YAAQ B.subtilis (NCBI ptt file)||47, 334|
|CAC0302||CAC0302||Predicted metal-binding protein of ferredoxin fold (NCBI ptt file)||29, 47|
|CAC0471||CAC0471||GrpE protein HSP-70 cofactor (NCBI ptt file)||47, 221|
|CAC0489||CAC0489||Holo-acyl-carrier protein synthase (NCBI ptt file)||29, 42|
|CAC0490||CAC0490||Predicted sugar kinase, N-terminal region - uncharacterized conserved protein (NCBI ptt file)||29, 56|
|CAC0535||CAC0535||Metal-dependent hydrolase of the beta-lactamase superfamily II (NCBI ptt file)||47, 291|
|CAC0882||CAC0882||Predicted membrane protein, hemolysin III homolog (NCBI ptt file)||29, 334|
|CAC0948||CAC0948||Uncharacterized protein, DegV family (NCBI ptt file)||47, 334|
|CAC0949||CAC0949||Predicted transcriptional regulator (NCBI ptt file)||29, 352|
|CAC1053||CAC1053||LPS glycosyltransferase (NCBI ptt file)||29, 317|
|CAC1282||dnaK||Molecular chaperone DnaK, HSP70 family (NCBI ptt file)||47, 221|
|CAC1284||prmA||SAM-dependent methyltransferase (NCBI ptt file)||47, 137|
|CAC1286||CAC1286||Fe-S oxidoreductases (NCBI ptt file)||29, 352|
|CAC1426||CAC1426||Possible transcriptional regulator from leucine-rich protein (LRPR) family (NCBI ptt file)||47, 363|
|CAC1441||CAC1441||Hypothetical protein (NCBI ptt file)||47, 204|
|CAC1586||CAC1586||Integral membrane protein possibly involved in chromosome condensation (NCBI ptt file)||29, 99|
|CAC1604||CAC1604||Methylglyoxal synthase (NCBI ptt file)||47, 298|
|CAC1625||CAC1625||Phosphoserine phosphatase family protein (NCBI ptt file)||29, 51|
|CAC1674||gltB||Small subunit of NADPH-dependent glutamate synthase (NCBI ptt file)||29, 269|
|CAC1692||ftsA||Cell division protein, ftsA (NCBI ptt file)||29, 201|
|CAC1750||CAC1750||SpoVS-related protein (NCBI ptt file)||29, 278|
|CAC1752||ftsY||Signal recognition particle GTPase, FtsY (NCBI ptt file)||29, 269|
|CAC1812||CAC1812||Sporulation protein SpoIIIE, DNA segregation ATPase (NCBI ptt file)||29, 269|
|CAC1831||CAC1831||Protein containing Zn-finger domain (NCBI ptt file)||29, 73|
|CAC1964||rpsA||Ribosomal protein S1 (NCBI ptt file)||41, 47|
|CAC2130||spoVD||Stage V sporulation protein D, spoVD, FtsI/pbp family (NCBI ptt file)||11, 29|
|CAC2308||spoIIAA||Anti-anti-sigma factor (antagonist of SpoIIAB) (NCBI ptt file)||29, 164|
|CAC2484||CAC2484||Predicted membrane, YQJA B.subtilis ortholog (NCBI ptt file)||47, 292|
|CAC2507||CAC2507||Predicted membrane protein (NCBI ptt file)||29, 269|
|CAC2508||CAC2508||Nitroreductase family protein (NCBI ptt file)||29, 267|
|CAC2584||CAC2584||Protein containing ChW-repeats (NCBI ptt file)||29, 142|
|CAC2660||pykA||Pyruvate carboxylase, PYKA (NCBI ptt file)||29, 345|
|CAC2739||CAC2739||Predicted acetyltransferase (NCBI ptt file)||30, 47|
|CAC2788||CAC2788||Xaa-Pro aminopeptidase family enzyme (NCBI ptt file)||47, 221|
|CAC2941||CAC2941||HAD superfamily hydrolase (NCBI ptt file)||47, 279|
|CAC2942||CAC2942||Uncharacterized conserved protein fron YGAG family, predicted metal-dependent enzyme (NCBI ptt file)||47, 63|
|CAC2975||CAC2975||Hypothetical protein (NCBI ptt file)||47, 172|
|CAC2978||gatC||Glu-tRNA amidotransferase, subunit C (NCBI ptt file)||47, 137|
|CAC3176||ilvN||Acetolactate synthase, small subunit (NCBI ptt file)||29, 367|
|CAC3190||CAC3190||Arginine kinase related enzyme, YACI B.subtilis ortholog (NCBI ptt file)||47, 221|
|CAC3191||CAC3191||Uncharacterized conserved protein, containing ClpE-like Zn-zinger domain; YACH B.subtilis ortholog (NCBI ptt file)||47, 221|
|CAC3192||CAC3192||Transciptional regulator CTSR (NCBI ptt file)||47, 221|
|CAC3319||CAC3319||Signal transduction histidine kinase (NCBI ptt file)||29, 219|
|CAC3630||oppC||Oligopeptide ABC transporter, permease component (NCBI ptt file)||29, 87|
|CAC3631||oppB||Oligopeptide ABC transporter, permease component (NCBI ptt file)||29, 87|
|CAC3652||alsS||Acetolactate synthase (NCBI ptt file)||47, 363|
|CAC3653||CAC3653||Hypothetical protein (NCBI ptt file)||47, 221|
|CAC3714||CAC3714||Molecular chaperone (small heat shock protein), HSP18 (NCBI ptt file)||47, 221|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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