Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1831(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1831
|Gene||Common Name||Description||Module membership|
|CAC0007||gyrA||DNA gyrase (topoisomerase II) A subunit (NCBI ptt file)||29, 278|
|CAC0019||CAC0019||Transcriptional regulator, AcrR family (NCBI ptt file)||73, 341|
|CAC0297||CAC0297||Lysine decarboxylase (NCBI ptt file)||73, 363|
|CAC0302||CAC0302||Predicted metal-binding protein of ferredoxin fold (NCBI ptt file)||29, 47|
|CAC0480||nrdD||Oxygen-sensitive ribonucleoside-triphosphate reductase nrdD (NCBI ptt file)||73, 363|
|CAC0486||CAC0486||Hypothetical protein (NCBI ptt file)||73, 367|
|CAC0489||CAC0489||Holo-acyl-carrier protein synthase (NCBI ptt file)||29, 42|
|CAC0490||CAC0490||Predicted sugar kinase, N-terminal region - uncharacterized conserved protein (NCBI ptt file)||29, 56|
|CAC0525||CAC0525||Sensory transduction histidine kinase (HisKA and HATPase_c domains) (NCBI ptt file)||70, 73|
|CAC0642||CAC0642||Conserved domain seen in the bacterial SpoT (NCBI ptt file)||73, 367|
|CAC0787||CAC0787||Uncharacterized conserved protein, repeats (NCBI ptt file)||73, 154|
|CAC0882||CAC0882||Predicted membrane protein, hemolysin III homolog (NCBI ptt file)||29, 334|
|CAC0949||CAC0949||Predicted transcriptional regulator (NCBI ptt file)||29, 352|
|CAC0992||CAC0992||Hypothetical protein (NCBI ptt file)||73, 281|
|CAC1034||CAC1034||Hypothetical protein (NCBI ptt file)||73, 294|
|CAC1053||CAC1053||LPS glycosyltransferase (NCBI ptt file)||29, 317|
|CAC1286||CAC1286||Fe-S oxidoreductases (NCBI ptt file)||29, 352|
|CAC1586||CAC1586||Integral membrane protein possibly involved in chromosome condensation (NCBI ptt file)||29, 99|
|CAC1606||CAC1606||Uncharacterized conserved protein (NCBI ptt file)||4, 73|
|CAC1625||CAC1625||Phosphoserine phosphatase family protein (NCBI ptt file)||29, 51|
|CAC1653||CAC1653||Predicted glycosyltransferases involved in cell wall biogenesis (NCBI ptt file)||73, 118|
|CAC1658||CAC1658||Phospholipase D family protein (NCBI ptt file)||73, 326|
|CAC1663||CAC1663||Hypothetical protein (NCBI ptt file)||73, 366|
|CAC1674||gltB||Small subunit of NADPH-dependent glutamate synthase (NCBI ptt file)||29, 269|
|CAC1692||ftsA||Cell division protein, ftsA (NCBI ptt file)||29, 201|
|CAC1750||CAC1750||SpoVS-related protein (NCBI ptt file)||29, 278|
|CAC1752||ftsY||Signal recognition particle GTPase, FtsY (NCBI ptt file)||29, 269|
|CAC1771||CAC1771||Uncharacterized protein, ykrI B.subtilis homolog (NCBI ptt file)||73, 158|
|CAC1812||CAC1812||Sporulation protein SpoIIIE, DNA segregation ATPase (NCBI ptt file)||29, 269|
|CAC1817||CAC1817||Stage V sporulation protein, spoVS (NCBI ptt file)||38, 73|
|CAC1831||CAC1831||Protein containing Zn-finger domain (NCBI ptt file)||29, 73|
|CAC1841||CAC1841||Uncharacterized protein, related to Spore coat protein CotS (NCBI ptt file)||73, 269|
|CAC2130||spoVD||Stage V sporulation protein D, spoVD, FtsI/pbp family (NCBI ptt file)||11, 29|
|CAC2287||CAC2287||Acyl-CoA reductase LuxC (NCBI ptt file)||73, 345|
|CAC2308||spoIIAA||Anti-anti-sigma factor (antagonist of SpoIIAB) (NCBI ptt file)||29, 164|
|CAC2465||CAC2465||Uncharacterized conserved protein (NCBI ptt file)||73, 367|
|CAC2480||CAC2480||Predicted acetyltransferase (NCBI ptt file)||73, 228|
|CAC2507||CAC2507||Predicted membrane protein (NCBI ptt file)||29, 269|
|CAC2508||CAC2508||Nitroreductase family protein (NCBI ptt file)||29, 267|
|CAC2584||CAC2584||Protein containing ChW-repeats (NCBI ptt file)||29, 142|
|CAC2660||pykA||Pyruvate carboxylase, PYKA (NCBI ptt file)||29, 345|
|CAC2789||CAC2789||Hypothetical protein (NCBI ptt file)||73, 289|
|CAC2802||CAC2802||Predicted phosphoglycerol transferase (alkaline phosphatase superfamily), YFNI B.subtilis (NCBI ptt file)||73, 367|
|CAC2919||CAC2919||Hypothetical protein (NCBI ptt file)||24, 73|
|CAC3019||CAC3019||Sensory transduction protein with GGDEF and EAL domains (NCBI ptt file)||73, 367|
|CAC3175||CAC3175||Hypothetical protein (NCBI ptt file)||73, 292|
|CAC3176||ilvN||Acetolactate synthase, small subunit (NCBI ptt file)||29, 367|
|CAC3319||CAC3319||Signal transduction histidine kinase (NCBI ptt file)||29, 219|
|CAC3427||CAC3427||PTS system, (possibly glucose-specific) IIA component (NCBI ptt file)||73, 366|
|CAC3630||oppC||Oligopeptide ABC transporter, permease component (NCBI ptt file)||29, 87|
|CAC3631||oppB||Oligopeptide ABC transporter, permease component (NCBI ptt file)||29, 87|
|CAC3648||CAC3648||Acetyltransferase (with duplicated domains), possibly RIMI-like protein (NCBI ptt file)||73, 363|
|CAC3654||CAC3654||Heavy-metal binding protein (similar to N-terminal domain of MerA) (NCBI ptt file)||73, 320|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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