Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0447(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0447
Module neighborhood information for CAC0447
|Gene||Common Name||Description||Module membership|
|CAC0011||CAC0011||Uncharacterized conserved of ErfK family (NCBI ptt file)||113, 279|
|CAC0200||CAC0200||Uncharacterized membrane protein (NCBI ptt file)||33, 227|
|CAC0244||CAC0244||Integral membrane protein (permease) (NCBI ptt file)||33, 227|
|CAC0246||CAC0246||Conserved membrane protein, predicted permease (NCBI ptt file)||66, 113|
|CAC0366||CAC0366||Predicted permease (NCBI ptt file)||113, 282|
|CAC0375||patA||PLP-dependent aminotransferase (gene patA) (NCBI ptt file)||99, 113|
|CAC0393||kdgR||KDG operon repressor (gene kdgR), LacI family (NCBI ptt file)||33, 227|
|CAC0447||feoA||FeoA protein, involved in Fe2+ transport (NCBI ptt file)||113, 227|
|CAC0448||feoB||Ferrous iron transport protein B (feoB-2) (NCBI ptt file)||70, 227|
|CAC0449||CAC0449||Hypothetical protein (NCBI ptt file)||33, 227|
|CAC0588||CAC0588||Hypothetical protein (NCBI ptt file)||227, 266|
|CAC0788||CAC0788||Ferrichrome transport permease (NCBI ptt file)||33, 227|
|CAC0789||fhuB||permease (NCBI ptt file)||33, 227|
|CAC0790||fhuD||Ferrichrome-binding periplasmic proteinl, fhuD (NCBI ptt file)||33, 227|
|CAC0791||hfuC||Ferrichrome ABC transporter, ATP-binding protein, fhuC (NCBI ptt file)||33, 227|
|CAC0906||CAC0906||Alanyl-tRNA synthetase related protein (NCBI ptt file)||113, 154|
|CAC0907||CAC0907||Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis (NCBI ptt file)||113, 227|
|CAC1304||CAC1304||Uncharacterized conserved protein, predicted metal-binding (NCBI ptt file)||113, 363|
|CAC1438||CAC1438||Hypothetical protein (NCBI ptt file)||113, 158|
|CAC1443||CAC1443||Hypothetical protein (NCBI ptt file)||113, 181|
|CAC1470||CAC1470||2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate hydrolase (NCBI ptt file)||66, 227|
|CAC1471||arbA||Ketopantoate reductase (NCBI ptt file)||66, 227|
|CAC1480||CAC1480||Predicted dehydrogenase (NCBI ptt file)||113, 134|
|CAC1548||trxB||Thioredoxin reductase (NCBI ptt file)||227, 326|
|CAC1591||CAC1591||Uncharacterized membrane protein, YCGQ B. subtilis homolog (NCBI ptt file)||113, 115|
|CAC1665||CAC1665||Predicted amidohydrolase (NCBI ptt file)||41, 113|
|CAC1666||CAC1666||Predicted membrane protein (NCBI ptt file)||113, 238|
|CAC1979||CAC1979||Predicted membrane protein (NCBI ptt file)||113, 363|
|CAC2241||CAC2241||Cation transport P-type ATPase (NCBI ptt file)||33, 227|
|CAC2486||CAC2486||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||113, 218|
|CAC2561||CAC2561||Predicted acetyltransferase (NCBI ptt file)||113, 210|
|CAC2625||CAC2625||Predicted membrane protein (NCBI ptt file)||41, 113|
|CAC2687||recQ||RecQ protein, superfamily II DNA helicase (NCBI ptt file)||113, 345|
|CAC2994||CAC2994||Toxic anion resistance protein, TELA family, YCEH B.subtilis ortholog (NCBI ptt file)||113, 146|
|CAC3088||CAC3088||NtrC family transcriptional regulator, ATPase domain fused to two PAS domains (NCBI ptt file)||113, 287|
|CAC3243||CAC3243||Membrane associated methyl-accepting chemotaxis protein (NCBI ptt file)||113, 342|
|CAC3324||CAC3324||Predicted transcriptional regulator (NCBI ptt file)||24, 227|
|CAC3376||CAC3376||Possible pectin degradation protein (sugar phosphate isomerase family) (NCBI ptt file)||113, 292|
|CAC3536||CAC3536||Uncharacterized conserved protein, YbeA family (NCBI ptt file)||113, 222|
|CAC3685||CAC3685||Predicted membrane protein (NCBI ptt file)||33, 227|
|CAC3695||CAC3695||Possible transcriptional regulator, containing DNA-binding domain of xre family (NCBI ptt file)||113, 292|
|CAC3696||CAC3696||Uncharacterized conserved membrane protein, YUEB B.subtilis homolog (NCBI ptt file)||113, 336|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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