Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1438(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1438
|Gene||Common Name||Description||Module membership|
|CAC0011||CAC0011||Uncharacterized conserved of ErfK family (NCBI ptt file)||113, 279|
|CAC0246||CAC0246||Conserved membrane protein, predicted permease (NCBI ptt file)||66, 113|
|CAC0366||CAC0366||Predicted permease (NCBI ptt file)||113, 282|
|CAC0375||patA||PLP-dependent aminotransferase (gene patA) (NCBI ptt file)||99, 113|
|CAC0447||feoA||FeoA protein, involved in Fe2+ transport (NCBI ptt file)||113, 227|
|CAC0906||CAC0906||Alanyl-tRNA synthetase related protein (NCBI ptt file)||113, 154|
|CAC0907||CAC0907||Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis (NCBI ptt file)||113, 227|
|CAC1049||CAC1049||Uncharacterized conserved protein,ortholog of YaaR B.subtilis (NCBI ptt file)||117, 158|
|CAC1304||CAC1304||Uncharacterized conserved protein, predicted metal-binding (NCBI ptt file)||113, 363|
|CAC1438||CAC1438||Hypothetical protein (NCBI ptt file)||113, 158|
|CAC1439||CAC1439||Uncharacterized conserved protein (NCBI ptt file)||115, 158|
|CAC1440||CAC1440||Hypothetical protein (NCBI ptt file)||115, 158|
|CAC1443||CAC1443||Hypothetical protein (NCBI ptt file)||113, 181|
|CAC1480||CAC1480||Predicted dehydrogenase (NCBI ptt file)||113, 134|
|CAC1481||CAC1481||Transcriptional regulator, LysR family (NCBI ptt file)||140, 158|
|CAC1482||CAC1482||Uncharacterized membrane protein,ortholog of YDFK B.subtilis (NCBI ptt file)||158, 346|
|CAC1499||CAC1499||A/G-specific DNA glycosylase (NCBI ptt file)||140, 158|
|CAC1504||CAC1504||MDR-type permease (NCBI ptt file)||140, 158|
|CAC1591||CAC1591||Uncharacterized membrane protein, YCGQ B. subtilis homolog (NCBI ptt file)||113, 115|
|CAC1665||CAC1665||Predicted amidohydrolase (NCBI ptt file)||41, 113|
|CAC1666||CAC1666||Predicted membrane protein (NCBI ptt file)||113, 238|
|CAC1771||CAC1771||Uncharacterized protein, ykrI B.subtilis homolog (NCBI ptt file)||73, 158|
|CAC1979||CAC1979||Predicted membrane protein (NCBI ptt file)||113, 363|
|CAC2055||CAC2055||Predicted transcriptional regulator (NCBI ptt file)||158, 345|
|CAC2364||CAC2364||Uncharacterized protein, homolog of gi|2274936 Eubacterium acidaminophilum (NCBI ptt file)||158, 261|
|CAC2418||CAC2418||Uncharacterized conserved membrane protein (NCBI ptt file)||117, 158|
|CAC2486||CAC2486||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||113, 218|
|CAC2496||CAC2496||Predicted phosphatase of HAD hydrolase superfamily (NCBI ptt file)||158, 261|
|CAC2561||CAC2561||Predicted acetyltransferase (NCBI ptt file)||113, 210|
|CAC2608||CAC2608||Trancriptional regulator of AraC family (NCBI ptt file)||117, 158|
|CAC2625||CAC2625||Predicted membrane protein (NCBI ptt file)||41, 113|
|CAC2687||recQ||RecQ protein, superfamily II DNA helicase (NCBI ptt file)||113, 345|
|CAC2694||CAC2694||Hypothetical protein (NCBI ptt file)||158, 345|
|CAC2928||CAC2928||Predicted membrane protein (NCBI ptt file)||140, 158|
|CAC2994||CAC2994||Toxic anion resistance protein, TELA family, YCEH B.subtilis ortholog (NCBI ptt file)||113, 146|
|CAC3088||CAC3088||NtrC family transcriptional regulator, ATPase domain fused to two PAS domains (NCBI ptt file)||113, 287|
|CAC3243||CAC3243||Membrane associated methyl-accepting chemotaxis protein (NCBI ptt file)||113, 342|
|CAC3376||CAC3376||Possible pectin degradation protein (sugar phosphate isomerase family) (NCBI ptt file)||113, 292|
|CAC3424||CAC3424||Transcriptional regulator, RpiR family (NCBI ptt file)||158, 345|
|CAC3519||CAC3519||Predicted membrane protein, possible permease (NCBI ptt file)||158, 207|
|CAC3520||CAC3520||ABC-type transport system, ATPase component (NCBI ptt file)||158, 207|
|CAC3536||CAC3536||Uncharacterized conserved protein, YbeA family (NCBI ptt file)||113, 222|
|CAC3611||CAC3611||Regulatory protein related to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) (NCBI ptt file)||117, 158|
|CAC3614||CAC3614||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3615||CAC3615||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3616||CAC3616||ABC transport system, ATPase component (NCBI ptt file)||115, 158|
|CAC3695||CAC3695||Possible transcriptional regulator, containing DNA-binding domain of xre family (NCBI ptt file)||113, 292|
|CAC3696||CAC3696||Uncharacterized conserved membrane protein, YUEB B.subtilis homolog (NCBI ptt file)||113, 336|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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