Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1979(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1979
|Gene||Common Name||Description||Module membership|
|CAC0011||CAC0011||Uncharacterized conserved of ErfK family (NCBI ptt file)||113, 279|
|CAC0092||CAC0092||Uncharacterized predicted membrane protein, YTWI B.subtilis ortholog (NCBI ptt file)||305, 363|
|CAC0144||sfsa||Sugar fermentation-stimulation protein (NCBI ptt file)||154, 363|
|CAC0246||CAC0246||Conserved membrane protein, predicted permease (NCBI ptt file)||66, 113|
|CAC0280||CAC0280||Molybdate transport system, permease component (NCBI ptt file)||317, 363|
|CAC0281||CAC0281||Molybdate-binding periplasmic protein (NCBI ptt file)||363, 366|
|CAC0297||CAC0297||Lysine decarboxylase (NCBI ptt file)||73, 363|
|CAC0366||CAC0366||Predicted permease (NCBI ptt file)||113, 282|
|CAC0375||patA||PLP-dependent aminotransferase (gene patA) (NCBI ptt file)||99, 113|
|CAC0447||feoA||FeoA protein, involved in Fe2+ transport (NCBI ptt file)||113, 227|
|CAC0480||nrdD||Oxygen-sensitive ribonucleoside-triphosphate reductase nrdD (NCBI ptt file)||73, 363|
|CAC0713||eno||Enolase (NCBI ptt file)||128, 363|
|CAC0715||vacB||FUSION ribonuclease and ribosomal protein S1 domain (NCBI ptt file)||313, 363|
|CAC0845||CAC0845||Ferritin-like protein Rsg (NCBI ptt file)||65, 363|
|CAC0906||CAC0906||Alanyl-tRNA synthetase related protein (NCBI ptt file)||113, 154|
|CAC0907||CAC0907||Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis (NCBI ptt file)||113, 227|
|CAC1304||CAC1304||Uncharacterized conserved protein, predicted metal-binding (NCBI ptt file)||113, 363|
|CAC1324||CAC1324||Uncharacterized predected metal-binding protein (NCBI ptt file)||204, 363|
|CAC1426||CAC1426||Possible transcriptional regulator from leucine-rich protein (LRPR) family (NCBI ptt file)||47, 363|
|CAC1438||CAC1438||Hypothetical protein (NCBI ptt file)||113, 158|
|CAC1443||CAC1443||Hypothetical protein (NCBI ptt file)||113, 181|
|CAC1480||CAC1480||Predicted dehydrogenase (NCBI ptt file)||113, 134|
|CAC1591||CAC1591||Uncharacterized membrane protein, YCGQ B. subtilis homolog (NCBI ptt file)||113, 115|
|CAC1665||CAC1665||Predicted amidohydrolase (NCBI ptt file)||41, 113|
|CAC1666||CAC1666||Predicted membrane protein (NCBI ptt file)||113, 238|
|CAC1979||CAC1979||Predicted membrane protein (NCBI ptt file)||113, 363|
|CAC2233||CAC2233||TRNA 5-methylaminomethyl-2-thiouridylate)-methyltransferase, PP-loop ATPase (NCBI ptt file)||329, 363|
|CAC2486||CAC2486||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||113, 218|
|CAC2543||etfA||Electron-transferring flavoprotein large subunit (NCBI ptt file)||41, 363|
|CAC2561||CAC2561||Predicted acetyltransferase (NCBI ptt file)||113, 210|
|CAC2625||CAC2625||Predicted membrane protein (NCBI ptt file)||41, 113|
|CAC2687||recQ||RecQ protein, superfamily II DNA helicase (NCBI ptt file)||113, 345|
|CAC2921||thiH||Thiamine biosynthesis enzyme, thiH (NCBI ptt file)||208, 363|
|CAC2923||CAC2923||Dinucleotide-utilizing enzyme involved in molybdopterin/thiamine biosynthesis (NCBI ptt file)||208, 363|
|CAC2945||CAC2945||Possible phosphoglycerate dehydrogenase (NCBI ptt file)||279, 363|
|CAC2946||CAC2946||Hypothetical protein (NCBI ptt file)||345, 363|
|CAC2977||gatA||Glutamyl-tRNAGln amidotransferase subunit A (NCBI ptt file)||221, 363|
|CAC2994||CAC2994||Toxic anion resistance protein, TELA family, YCEH B.subtilis ortholog (NCBI ptt file)||113, 146|
|CAC3088||CAC3088||NtrC family transcriptional regulator, ATPase domain fused to two PAS domains (NCBI ptt file)||113, 287|
|CAC3243||CAC3243||Membrane associated methyl-accepting chemotaxis protein (NCBI ptt file)||113, 342|
|CAC3376||CAC3376||Possible pectin degradation protein (sugar phosphate isomerase family) (NCBI ptt file)||113, 292|
|CAC3536||CAC3536||Uncharacterized conserved protein, YbeA family (NCBI ptt file)||113, 222|
|CAC3648||CAC3648||Acetyltransferase (with duplicated domains), possibly RIMI-like protein (NCBI ptt file)||73, 363|
|CAC3652||alsS||Acetolactate synthase (NCBI ptt file)||47, 363|
|CAC3695||CAC3695||Possible transcriptional regulator, containing DNA-binding domain of xre family (NCBI ptt file)||113, 292|
|CAC3696||CAC3696||Uncharacterized conserved membrane protein, YUEB B.subtilis homolog (NCBI ptt file)||113, 336|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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