Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1199(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1199
|Gene||Common Name||Description||Module membership|
|CAC0012||CAC0012||Predicted dehydrogenase with iron-sulfur domain (NCBI ptt file)||86, 328|
|CAC0053||CAC0053||Hypothetical protein (NCBI ptt file)||70, 86|
|CAC0081||agrA||Accessory gene regulator protein A (NCBI ptt file)||53, 86|
|CAC0172||CAC0172||Predicted membrane protein (NCBI ptt file)||123, 328|
|CAC0199||CAC0199||Hypothetical protein (NCBI ptt file)||86, 244|
|CAC0309||CAC0309||Cell wall-associated hydrolase (NCBI ptt file)||4, 86|
|CAC0422||licT||Transcriptional antiterminator licT (NCBI ptt file)||86, 328|
|CAC0574||CAC0574||Pectate lyase H (FS) (NCBI ptt file)||123, 256|
|CAC0705||CAC0705||Sugar ABC transporter, permease protein (NCBI ptt file)||65, 123|
|CAC0761||CAC0761||Predicted membrane protein (NCBI ptt file)||66, 86|
|CAC0813||CAC0813||Hypothetical protein (NCBI ptt file)||123, 150|
|CAC0926||CAC0926||TPR-repeat-containing protein (NCBI ptt file)||123, 270|
|CAC1199||CAC1199||Hypothetical protein (NCBI ptt file)||86, 123|
|CAC1237||CAC1237||Hypothetical protein (NCBI ptt file)||86, 313|
|CAC1320||glpP||Glycerol-3-phosphate responsive antiterminator (mRNA-binding), GLPP (NCBI ptt file)||4, 86|
|CAC1406||CAC1406||Transcriptional antiterminator (BglG family) (NCBI ptt file)||86, 133|
|CAC1446||CAC1446||Hypothetical protein (NCBI ptt file)||123, 270|
|CAC1460||CAC1460||PTS system, fructose(mannose)-specific IID (NCBI ptt file)||86, 136|
|CAC1580||CAC1580||Hypothetical protein (NCBI ptt file)||90, 123|
|CAC1650||CAC1650||Hypothetical protein, CF-38 family (NCBI ptt file)||123, 270|
|CAC1844||CAC1844||Hypothetical protein (NCBI ptt file)||26, 123|
|CAC1845||motB||Flagellar motor protein MotB (NCBI ptt file)||123, 137|
|CAC1846||motA||Flagellar motor component MotA (NCBI ptt file)||102, 123|
|CAC2079||CAC2079||Hypothetical protein (NCBI ptt file)||86, 272|
|CAC2251||CAC2251||Uncharacterized conserved membrane protein, affecting LPS biosynthesis (NCBI ptt file)||123, 312|
|CAC2267||CAC2267||Hypothetical protein (NCBI ptt file)||111, 123|
|CAC2291||CAC2291||Hypothetical protein (NCBI ptt file)||86, 102|
|CAC2331||CAC2331||DTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file)||86, 211|
|CAC2339||CAC2339||Uncharacterized protein, YBBK B.subtilis ortholog (NCBI ptt file)||76, 123|
|CAC2469||CAC2469||Lactoylglutathione lyase (fragment) (NCBI ptt file)||78, 86|
|CAC2494||CAC2494||Predicted membrane protein (NCBI ptt file)||53, 86|
|CAC2586||CAC2586||Predicted membrane protein (NCBI ptt file)||123, 169|
|CAC2636||CAC2636||Predicted GTPase, YSXC B.subtilis ortholog (NCBI ptt file)||102, 123|
|CAC2690||CAC2690||Transcriptional regulator, LysR family (NCBI ptt file)||86, 137|
|CAC2702||CAC2702||Possible signal transduction protein (containing EAL, CBS and GGDEF domains) (NCBI ptt file)||123, 333|
|CAC2720||CAC2720||Sensory protein containing histidine kinase, PAS anf GAF domains (NCBI ptt file)||102, 123|
|CAC2811||CAC2811||Hypothetical protein, CF-17 family (NCBI ptt file)||123, 258|
|CAC2826||CAC2826||Intracellular protease/amidase related enzyme (ThiJ family) (NCBI ptt file)||86, 273|
|CAC2981||CAC2981||Mannose-1-phosphate guanyltransferase (pyrophosphorylase domain and phosphomannomutase domain) (NCBI ptt file)||118, 123|
|CAC3033||CAC3033||Uncharacterized protein containing conserved domain, related to YABE B.subtilis C-terminal domain (NCBI ptt file)||86, 233|
|CAC3213||CAC3213||Possible stage V sporulation protein B, predicted transporter (NCBI ptt file)||86, 118|
|CAC3226||CAC3226||Predicted membrane protein (NCBI ptt file)||86, 341|
|CAC3256||CAC3256||Predicted acetyltransferase (NCBI ptt file)||123, 341|
|CAC3280||CAC3280||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||4, 86|
|CAC3286||CAC3286||Chey-like receiver domain containing protein, YCBB B.subtilis ortholog (NCBI ptt file)||86, 328|
|CAC3313||CAC3313||Acyl carrier protein, ACP (NCBI ptt file)||86, 341|
|CAC3359||CAC3359||Nitroreductase family protein fused to ferredoxin domain (NCBI ptt file)||86, 266|
|CAC3395||CAC3395||Predicted membrane protein (NCBI ptt file)||57, 86|
|CAC3415||CAC3415||ABC-type multidrug/protein/lipid transport system, ATPase component (NCBI ptt file)||123, 208|
|CAC3602||CAC3602||HD superfamily hydrolase (NCBI ptt file)||86, 109|
|CAC3697||CAC3697||Uncharacterized, Zn-finger domain containing protein, YXKC B.subtilis homolog (NCBI ptt file)||123, 150|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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