Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1844(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1844
|Gene||Common Name||Description||Module membership|
|CAC0004||recF||RecF, ABC family ATPase (NCBI ptt file)||26, 272|
|CAC0172||CAC0172||Predicted membrane protein (NCBI ptt file)||123, 328|
|CAC0568||asd||Aspartate semialdehyde dehydrogenase (gene asd) (NCBI ptt file)||26, 258|
|CAC0574||CAC0574||Pectate lyase H (FS) (NCBI ptt file)||123, 256|
|CAC0705||CAC0705||Sugar ABC transporter, permease protein (NCBI ptt file)||65, 123|
|CAC0813||CAC0813||Hypothetical protein (NCBI ptt file)||123, 150|
|CAC0915||CAC0915||Endoglucanase A precursor (endo-1,4-beta-glucanase) (cellulase A), secreted; dockerin domain (NCBI ptt file)||26, 312|
|CAC0926||CAC0926||TPR-repeat-containing protein (NCBI ptt file)||123, 270|
|CAC1089||CAC1089||Serine kinase/phosphatase HPr (NCBI ptt file)||26, 159|
|CAC1162||CAC1162||Hypothetical protein, CF-11 family (NCBI ptt file)||26, 328|
|CAC1166||CAC1166||Hypothetical protein (NCBI ptt file)||26, 328|
|CAC1199||CAC1199||Hypothetical protein (NCBI ptt file)||86, 123|
|CAC1228||cisA||Site-specific DNA recombinase (NCBI ptt file)||26, 53|
|CAC1446||CAC1446||Hypothetical protein (NCBI ptt file)||123, 270|
|CAC1452||CAC1452||MDR-type permease (NCBI ptt file)||26, 53|
|CAC1526||CAC1526||Amidase, related to GSP of E.coli (NCBI ptt file)||26, 301|
|CAC1527||CAC1527||Spore germination protein GerKB (NCBI ptt file)||26, 183|
|CAC1580||CAC1580||Hypothetical protein (NCBI ptt file)||90, 123|
|CAC1605||arbA||Ketopantoate reductase (NCBI ptt file)||26, 298|
|CAC1650||CAC1650||Hypothetical protein, CF-38 family (NCBI ptt file)||123, 270|
|CAC1844||CAC1844||Hypothetical protein (NCBI ptt file)||26, 123|
|CAC1845||motB||Flagellar motor protein MotB (NCBI ptt file)||123, 137|
|CAC1846||motA||Flagellar motor component MotA (NCBI ptt file)||102, 123|
|CAC1861||CAC1861||Fragment flavodoxin oxidoreductase (NCBI ptt file)||26, 244|
|CAC2056||CAC2056||Hypothetical protein (NCBI ptt file)||26, 359|
|CAC2114||CAC2114||Predicted pseudouridylate synthase, YLYB B.subtilis ortholog (NCBI ptt file)||26, 270|
|CAC2189||CAC2189||Carbamoylphosphate synthase large subunit, short form (NCBI ptt file)||26, 119|
|CAC2224||cheW||Chemotaxis protein CheW (NCBI ptt file)||26, 339|
|CAC2251||CAC2251||Uncharacterized conserved membrane protein, affecting LPS biosynthesis (NCBI ptt file)||123, 312|
|CAC2267||CAC2267||Hypothetical protein (NCBI ptt file)||111, 123|
|CAC2284||ruvB||Holliday junction specific DNA helicase, subunit ruvB (NCBI ptt file)||26, 229|
|CAC2333||spsI||DTDP-glucose pyrophosphorylase (NCBI ptt file)||26, 172|
|CAC2339||CAC2339||Uncharacterized protein, YBBK B.subtilis ortholog (NCBI ptt file)||76, 123|
|CAC2489||CAC2489||Predicted membrane protein (NCBI ptt file)||11, 26|
|CAC2586||CAC2586||Predicted membrane protein (NCBI ptt file)||123, 169|
|CAC2636||CAC2636||Predicted GTPase, YSXC B.subtilis ortholog (NCBI ptt file)||102, 123|
|CAC2655||CAC2655||Uncharacterized membrane-associated protein, DedA family (NCBI ptt file)||26, 359|
|CAC2702||CAC2702||Possible signal transduction protein (containing EAL, CBS and GGDEF domains) (NCBI ptt file)||123, 333|
|CAC2715||CAC2715||Hypothetical protein (NCBI ptt file)||26, 53|
|CAC2720||CAC2720||Sensory protein containing histidine kinase, PAS anf GAF domains (NCBI ptt file)||102, 123|
|CAC2743||CAC2743||Predicted permease, YXIO B.subtilis ortholog (NCBI ptt file)||26, 240|
|CAC2762||CAC2762||Polyferredoxin (NCBI ptt file)||26, 150|
|CAC2811||CAC2811||Hypothetical protein, CF-17 family (NCBI ptt file)||123, 258|
|CAC2981||CAC2981||Mannose-1-phosphate guanyltransferase (pyrophosphorylase domain and phosphomannomutase domain) (NCBI ptt file)||118, 123|
|CAC3256||CAC3256||Predicted acetyltransferase (NCBI ptt file)||123, 341|
|CAC3415||CAC3415||ABC-type multidrug/protein/lipid transport system, ATPase component (NCBI ptt file)||123, 208|
|CAC3479||CAC3479||Hypothetical protein (NCBI ptt file)||26, 68|
|CAC3554||CAC3554||Siderophore/Surfactin synthetase related protein (NCBI ptt file)||26, 208|
|CAC3609||CAC3609||ABC-type MDR transport system, permease component (NCBI ptt file)||26, 150|
|CAC3697||CAC3697||Uncharacterized, Zn-finger domain containing protein, YXKC B.subtilis homolog (NCBI ptt file)||123, 150|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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