Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1306(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1306
|Gene||Common Name||Description||Module membership|
|CAC0001||dnaA||DNA replication initiator protein, ATPase (NCBI ptt file)||3, 5|
|CAC0294||CAC0294||Magnesium and cobalt transporter (NCBI ptt file)||3, 5|
|CAC0978||CAC0978||Possible elongation subunit of DNA-dependent DNA polymerase (NCBI ptt file)||5, 268|
|CAC0988||CAC0988||Probably membrane protein (NCBI ptt file)||5, 134|
|CAC1195||ligA||DNA ligase (NAD dependent), LigA (NCBI ptt file)||3, 5|
|CAC1245||pbpA||Penicillin-binding protein 2 (NCBI ptt file)||2, 5|
|CAC1292||CAC1292||Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog (NCBI ptt file)||51, 283|
|CAC1293||CAC1293||Uncharacterized conserved predicted metal-binding protein, YQFG ortholog (NCBI ptt file)||51, 229|
|CAC1294||dgkA/pgpB||Diacylglycerol kinase (dgkA) fused to phosphatase B domain (pgpB) (NCBI ptt file)||51, 229|
|CAC1305||CAC1305||Uncharacterized protein similar to a protein from Cylindrotheca fusiformis plasmid (GI:99322) (NCBI ptt file)||51, 315|
|CAC1306||CAC1306||Hypothetical protein (NCBI ptt file)||5, 51|
|CAC1307||CAC1307||Hypothetical protein (NCBI ptt file)||51, 297|
|CAC1308||CAC1308||Uncharacterized low-complexity protein, related to YISX/YYBG B.subtilis (NCBI ptt file)||51, 317|
|CAC1309||CAC1309||Hypothetical protein (NCBI ptt file)||3, 51|
|CAC1495||CAC1495||Enzyme of dihydrofolate reductase family, ortholog YWFD B.subtilis (NCBI ptt file)||5, 247|
|CAC1625||CAC1625||Phosphoserine phosphatase family protein (NCBI ptt file)||29, 51|
|CAC1685||CAC1685||Uncharacterized protein from YceG family (NCBI ptt file)||5, 315|
|CAC1687||CAC1687||Collagenase family protease (NCBI ptt file)||5, 315|
|CAC1736||recG||RecG helicase (NCBI ptt file)||3, 51|
|CAC1749||CAC1749||BioB/LipA-like protein (NCBI ptt file)||5, 283|
|CAC1793||lexA||P-loop ATPase domain fused to LexA-like protein (NCBI ptt file)||3, 5|
|CAC1794||CAC1794||Predicted permease (NCBI ptt file)||3, 51|
|CAC1804||CAC1804||Exopolyphosphatase family protein (NCBI ptt file)||5, 213|
|CAC1806||CAC1806||Riboflavin kinase/FAD synthase (NCBI ptt file)||5, 213|
|CAC1818||CAC1818||Conserved membrane protein, possible 4-hydroxybenzoate octaprenyltranferase (NCBI ptt file)||3, 51|
|CAC1823||CAC1823||Uncharacterized conserved protein (NCBI ptt file)||51, 315|
|CAC1824||clpA||ATP-dependent Clp proteinase (NCBI ptt file)||51, 315|
|CAC1982||CAC1982||Predicted membrane protein (NCBI ptt file)||51, 317|
|CAC2065||deoB||Phosphopentomutase (NCBI ptt file)||51, 91|
|CAC2066||CAC2066||Integrase/recombinase XerD family (NCBI ptt file)||51, 91|
|CAC2067||CAC2067||Hypothetical protein (NCBI ptt file)||51, 268|
|CAC2068||CAC2068||Sporulation factor spoIIM, uncharacterized membrane protein (NCBI ptt file)||51, 268|
|CAC2115||lspA||Lipoprotein signal peptidase (NCBI ptt file)||51, 352|
|CAC2138||CAC2138||Exopolyphosphatase (NCBI ptt file)||2, 51|
|CAC2234||nifS||NifS family enzyme (cysteine desulfurase/cysteine sulfinate desulfinase) (NCBI ptt file)||51, 329|
|CAC2269||aspS||Aspartyl-tRNA synthetase (NCBI ptt file)||51, 329|
|CAC2323||CAC2323||Predicted membrane protein (NCBI ptt file)||5, 82|
|CAC2340||mutS1||DNA mismatch repair protein mutS, YSHD B.subtilis ortholog (NCBI ptt file)||51, 91|
|CAC2341||CAC2341||Collagenase family protease (NCBI ptt file)||51, 351|
|CAC2672||CAC2672||Predicted membrane protein (NCBI ptt file)||5, 352|
|CAC2698||CAC2698||Hypothetical protein (NCBI ptt file)||5, 351|
|CAC2724||CAC2724||Hypothetical protein (NCBI ptt file)||51, 278|
|CAC2725||CAC2725||Predicted hydrolase from alpha/beta family, YQKD B.subtilis ortholog (NCBI ptt file)||51, 225|
|CAC2770||CAC2770||Amino acid transporter (NCBI ptt file)||3, 51|
|CAC2844||galT||Galactose-1-phosphate uridylyltransferase (NCBI ptt file)||5, 100|
|CAC2938||CAC2938||Hypothetical protein (NCBI ptt file)||5, 62|
|CAC3151||rpmG||L33 (NCBI ptt file)||5, 255|
|CAC3152||CAC3152||DNA-dependent RNA polymerase sigma subunit (NCBI ptt file)||5, 109|
|CAC3228||CAC3228||Predicted membrane protein (NCBI ptt file)||5, 117|
|CAC3390||CAC3390||Response regulator (CheY-like receiver domain containing) (NCBI ptt file)||51, 297|
|CAC3391||CAC3391||Membrane associated signal transduction histidine kinase (NCBI ptt file)||51, 351|
|CAC3734||thdF||Predicted GTPase, ThdF family (NCBI ptt file)||5, 100|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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