Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1313(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1313
|Gene||Common Name||Description||Module membership|
|CAC0024||CAC0024||Membrane protein, related to Actinobacillus protein (1944168) (NCBI ptt file)||38, 295|
|CAC0034||CAC0034||Hypothetical protein (NCBI ptt file)||63, 298|
|CAC0115||CAC0115||Uncharacterized protein, Yje/RRF2 family (NCBI ptt file)||63, 232|
|CAC0207||CAC0207||Hypothetical protein, CF-6 family (NCBI ptt file)||63, 273|
|CAC0322||CAC0322||Sensory protein, containing EAL-domain (NCBI ptt file)||232, 295|
|CAC0827||CAC0827||Fructose-bisphosphate aldolase (NCBI ptt file)||32, 295|
|CAC0910||CAC0910||Probably cellulosomal scaffolding protein precursor, secreted; cellulose-binding and cohesin domain (NCBI ptt file)||53, 63|
|CAC0945||ssb||Single-stranded DNA-binding protein (NCBI ptt file)||63, 99|
|CAC0951||CAC0951||Ferric uptake regulation protein (NCBI ptt file)||25, 295|
|CAC0976||CAC0976||Uncharacterized conserved protein, ortholog yuzA B.subtilis (NCBI ptt file)||268, 295|
|CAC1027||CAC1027||Flavoprotein (NCBI ptt file)||295, 325|
|CAC1313||CAC1313||Hypothetical protein (NCBI ptt file)||63, 295|
|CAC1488||CAC1488||Glycosyltransferase involved in cell wall biogenesis (NCBI ptt file)||63, 273|
|CAC1733||rpmB||Ribosomal protein L28 (NCBI ptt file)||260, 295|
|CAC1820||CAC1820||Phosphocarrier Protein (Hpr) (NCBI ptt file)||260, 295|
|CAC1822||CAC1822||Fusion of predicted Zn-dependent amidase/peptidase (cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family; peptodoglycan-binding domain (NCBI ptt file)||295, 325|
|CAC1834||CAC1834||Host factor I protein Hfq (NCBI ptt file)||295, 325|
|CAC1855||CAC1855||Hypothetical protein (NCBI ptt file)||63, 210|
|CAC1965||greA||Transcription elongation factor GreA (NCBI ptt file)||63, 109|
|CAC2072||CAC2072||Stage IV sporulation protein B, SpoIVB (NCBI ptt file)||63, 273|
|CAC2118||CAC2118||Cell division protein DivIVA (NCBI ptt file)||295, 325|
|CAC2119||CAC2119||Predicted integral membrane protein, YggT family (NCBI ptt file)||128, 295|
|CAC2136||CAC2136||Hypothetical protein (NCBI ptt file)||87, 295|
|CAC2229||CAC2229||Pyruvate:ferredoxin oxidoreductase (NCBI ptt file)||59, 63|
|CAC2230||CAC2230||Uncharacterized protein of PR1 family, YkwD B.subtilis ortholog (NCBI ptt file)||63, 273|
|CAC2321||CAC2321||Predicted glycosyltransferase (NCBI ptt file)||63, 278|
|CAC2385||CAC2385||Hypothetical protein (NCBI ptt file)||289, 295|
|CAC2386||CAC2386||Predicted protein of beta-propeller fold (NCBI ptt file)||63, 321|
|CAC2387||CAC2387||Hypothetical protein (NCBI ptt file)||260, 295|
|CAC2646||sipS||Signal peptidase I (NCBI ptt file)||201, 295|
|CAC2858||mreV||Shape-determining protein envB (HSP70 family charepones) (NCBI ptt file)||36, 63|
|CAC2893||CAC2893||Hypothetical protein (NCBI ptt file)||63, 137|
|CAC2942||CAC2942||Uncharacterized conserved protein fron YGAG family, predicted metal-dependent enzyme (NCBI ptt file)||47, 63|
|CAC3184||CAC3184||4-diphosphocytidyl-2-methylerithritol synthase (Sugar Nucleotide Phosphorylase family) (NCBI ptt file)||87, 295|
|CAC3185||CAC3185||Membrane-associated protein containing a homolog of PilT-like ATPase N-terminal domain, YACL B.subtilis ortholog (NCBI ptt file)||283, 295|
|CAC3206||CAC3206||Ribosomal protein S1 domain family protein (NCBI ptt file)||38, 295|
|CAC3211||hbs||DNA binding protein HU (NCBI ptt file)||32, 295|
|CAC3217||spoVC||Stage V sporulation protein C, peptidyl-tRNA hydrolase (NCBI ptt file)||63, 105|
|CAC3219||CAC3219||Membrane associated histidine kinase with HAMP domain (NCBI ptt file)||19, 63|
|CAC3231||CAC3231||Predicted phosphatase, HAD superfamily (NCBI ptt file)||239, 295|
|CAC3251||CAC3251||Sensory transduction protein containing HD_GYP domain (NCBI ptt file)||63, 225|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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