Organism : Clostridium acetobutylicum | Module List :
Fusion of predicted Zn-dependent amidase/peptidase (cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family; peptodoglycan-binding domain (NCBI ptt file)
Functional Annotations (2)
|Uncharacterized protein conserved in bacteria||cog/ cog|
|metabolic process||go/ biological_process|
Regulation information for CAC1822(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC1822
Module neighborhood information for CAC1822
|Gene||Common Name||Description||Module membership|
|CAC0024||CAC0024||Membrane protein, related to Actinobacillus protein (1944168) (NCBI ptt file)||38, 295|
|CAC0322||CAC0322||Sensory protein, containing EAL-domain (NCBI ptt file)||232, 295|
|CAC0327||CAC0327||Bacterioferritin comigratory protein (AHPC/TSA family) (NCBI ptt file)||239, 325|
|CAC0438||CAC0438||Predicted metal-binding protein (NCBI ptt file)||182, 325|
|CAC0537||CAC0537||Acetylxylan esterase, acyl-CoA esterase or GDSL lipase family, strong similarity to C-terminal region of endoglucanase E precursor (NCBI ptt file)||289, 325|
|CAC0827||CAC0827||Fructose-bisphosphate aldolase (NCBI ptt file)||32, 295|
|CAC0951||CAC0951||Ferric uptake regulation protein (NCBI ptt file)||25, 295|
|CAC0976||CAC0976||Uncharacterized conserved protein, ortholog yuzA B.subtilis (NCBI ptt file)||268, 295|
|CAC1027||CAC1027||Flavoprotein (NCBI ptt file)||295, 325|
|CAC1313||CAC1313||Hypothetical protein (NCBI ptt file)||63, 295|
|CAC1733||rpmB||Ribosomal protein L28 (NCBI ptt file)||260, 295|
|CAC1755||rpsP||Ribosomal protein S16 (NCBI ptt file)||260, 325|
|CAC1820||CAC1820||Phosphocarrier Protein (Hpr) (NCBI ptt file)||260, 295|
|CAC1822||CAC1822||Fusion of predicted Zn-dependent amidase/peptidase (cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family; peptodoglycan-binding domain (NCBI ptt file)||295, 325|
|CAC1834||CAC1834||Host factor I protein Hfq (NCBI ptt file)||295, 325|
|CAC2118||CAC2118||Cell division protein DivIVA (NCBI ptt file)||295, 325|
|CAC2119||CAC2119||Predicted integral membrane protein, YggT family (NCBI ptt file)||128, 295|
|CAC2136||CAC2136||Hypothetical protein (NCBI ptt file)||87, 295|
|CAC2385||CAC2385||Hypothetical protein (NCBI ptt file)||289, 295|
|CAC2387||CAC2387||Hypothetical protein (NCBI ptt file)||260, 295|
|CAC2452||CAC2452||Flavodoxin (NCBI ptt file)||289, 325|
|CAC2646||sipS||Signal peptidase I (NCBI ptt file)||201, 295|
|CAC2681||CAC2681||Hypothetical protein (NCBI ptt file)||11, 325|
|CAC2708||hbd||Beta-hydroxybutyryl-CoA dehydrogenase, NAD-dependent (NCBI ptt file)||260, 325|
|CAC3075||buk||Butyrate kinase, BUK (NCBI ptt file)||260, 325|
|CAC3076||ptb||Phosphate butyryltransferase (NCBI ptt file)||260, 325|
|CAC3082||CAC3082||Thioredoxin reductase (NCBI ptt file)||260, 325|
|CAC3083||CAC3083||Thioredoxin (NCBI ptt file)||260, 325|
|CAC3165||CAC3165||Hypothetical protein (NCBI ptt file)||49, 325|
|CAC3184||CAC3184||4-diphosphocytidyl-2-methylerithritol synthase (Sugar Nucleotide Phosphorylase family) (NCBI ptt file)||87, 295|
|CAC3185||CAC3185||Membrane-associated protein containing a homolog of PilT-like ATPase N-terminal domain, YACL B.subtilis ortholog (NCBI ptt file)||283, 295|
|CAC3206||CAC3206||Ribosomal protein S1 domain family protein (NCBI ptt file)||38, 295|
|CAC3211||hbs||DNA binding protein HU (NCBI ptt file)||32, 295|
|CAC3231||CAC3231||Predicted phosphatase, HAD superfamily (NCBI ptt file)||239, 295|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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