Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2069(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2069
|Gene||Common Name||Description||Module membership|
|CAC0022||asd||Aspartate-semialdehyde dehydrogenase (NCBI ptt file)||176, 231|
|CAC0067||CAC0067||(FS) similar to ABC transporter (permease), YXDM B.subtilis ortholog (NCBI ptt file)||176, 246|
|CAC0083||CAC0083||PemK family of DNA-binding proteins (NCBI ptt file)||152, 260|
|CAC0130||CAC0130||Uncharacterized membrane protein, YTAF B.subtilis ortholog (NCBI ptt file)||176, 341|
|CAC0459||CAC0459||NtrC family transcriptional regulator (PAS and AAA domains) (NCBI ptt file)||92, 152|
|CAC0500||CAC0500||Membrane protein containing C-terminal PDZ domain (NCBI ptt file)||152, 182|
|CAC0550||CAC0550||Possible sigma factor (NCBI ptt file)||176, 253|
|CAC0691||CAC0691||Uncharacterized conserved protein, VanW of Enterococcus faecalis related (NCBI ptt file)||176, 253|
|CAC0693||CAC0693||Transcriptional regulator of the LacI family (NCBI ptt file)||176, 238|
|CAC0777||CAC0777||Acetyltransferase (the isoleucine patch superfamily) (NCBI ptt file)||176, 306|
|CAC0816||CAC0816||Lipase-esterase related protein (NCBI ptt file)||176, 209|
|CAC0950||CAC0950||Predicted membrane protein (NCBI ptt file)||152, 233|
|CAC0969||CAC0969||Hypothetical protein (NCBI ptt file)||152, 182|
|CAC0977||asnC||Transcriptional regulator, Lrp family (NCBI ptt file)||152, 268|
|CAC1045||CAC1045||Predicted permease (NCBI ptt file)||80, 176|
|CAC1068||CAC1068||Hypothetical protein, CF-25 family (NCBI ptt file)||176, 267|
|CAC1121||CAC1121||Predicted membrane protein (NCBI ptt file)||134, 152|
|CAC1214||CAC1214||Xre family DNA-binding domain and TPR-repeat containing protein (NCBI ptt file)||152, 268|
|CAC1215||CAC1215||Hypothetical protein (NCBI ptt file)||4, 176|
|CAC1312||CAC1312||Hypothetical protein (NCBI ptt file)||109, 176|
|CAC1434||CAC1434||Alkaline phosphatase superfamily protein (NCBI ptt file)||176, 276|
|CAC1554||CAC1554||Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein (NCBI ptt file)||176, 206|
|CAC1698||CAC1698||Uncharacterized conserved protein, YTCG B.subtilis ortholog (NCBI ptt file)||130, 152|
|CAC1868||CAC1868||Uncharacterized secreted protein, homolog YXKC Bacillus subtilis (NCBI ptt file)||152, 348|
|CAC1984||CAC1984||Predicted permease (NCBI ptt file)||176, 183|
|CAC2069||CAC2069||Hypothetical protein (NCBI ptt file)||152, 176|
|CAC2094||efp||Translation elongation factor P (NCBI ptt file)||152, 281|
|CAC2275||apt||Adenine phosphoribosyltransferase; Apt (NCBI ptt file)||152, 276|
|CAC2295||CAC2295||Uncharacterized conserved protein, YebC family (NCBI ptt file)||152, 296|
|CAC2366||CAC2366||Predicted membrane protein (NCBI ptt file)||85, 152|
|CAC2417||CAC2417||Hypothetical protein (NCBI ptt file)||152, 162|
|CAC2505||CAC2505||Uncharacterized membrane protein, YXJN B.subtilis homolog (NCBI ptt file)||134, 176|
|CAC2622||comE||ComE-like protein, Metallo beta-lactamase superfamily hydrolase (NCBI ptt file)||152, 233|
|CAC2751||CAC2751||Predicted acetyltransferase (NCBI ptt file)||176, 253|
|CAC2755||CAC2755||MDR-type ABC transporter (membrane associated ATPase) (NCBI ptt file)||140, 176|
|CAC2756||CAC2756||MDR-type ABC transporter (membrane associated ATPase) (NCBI ptt file)||102, 176|
|CAC2765||CAC2765||Similar to uncharacterized domain of sensory transducer protein (NCBI ptt file)||176, 309|
|CAC2967||CAC2967||Alpha-acetolactate decarboxylase (NCBI ptt file)||152, 206|
|CAC3360||CAC3360||Transcriptional regulator, LysR family (NCBI ptt file)||176, 277|
|CAC3386||CAC3386||Hypothetical protein (NCBI ptt file)||132, 176|
|CAC3414||CAC3414||ABC-type multidrug/protein/lipid transport system, ATPase component (NCBI ptt file)||176, 253|
|CAC3600||dapA||Dihydrodipicolinate synthase (NCBI ptt file)||176, 277|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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