Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2512(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2512
|Gene||Common Name||Description||Module membership|
|CAC0132||CAC0132||Hypothetical protein (NCBI ptt file)||247, 270|
|CAC0149||CAC0149||Hypothetical protein (NCBI ptt file)||133, 340|
|CAC0164||CAC0164||ABC transporter, ATP binding-protein (NCBI ptt file)||133, 340|
|CAC0165||CAC0165||Predicted ABC transporter, permease component (NCBI ptt file)||133, 340|
|CAC0434||CAC0434||Putative enzyme of deoxyxylulose pathway (terpenoid biosinthesis), YgbB family, similar to yacN B.subtilis (NCBI ptt file)||133, 340|
|CAC0619||CAC0619||Nitrate ABC transporter ATP binding protein (NCBI ptt file)||190, 270|
|CAC0886||CAC0886||Hypothetical protein (NCBI ptt file)||207, 270|
|CAC0925||CAC0925||TPR-repeat-containing protein (NCBI ptt file)||53, 270|
|CAC0926||CAC0926||TPR-repeat-containing protein (NCBI ptt file)||123, 270|
|CAC1075||CAC1075||Beta-glucosidase family protein (NCBI ptt file)||133, 340|
|CAC1081||CAC1081||Uncharacterized protein, probably surface-located (NCBI ptt file)||133, 340|
|CAC1084||CAC1084||Beta-glucosidase family protein (NCBI ptt file)||133, 340|
|CAC1085||CAC1085||Alpha-glucosidase (NCBI ptt file)||133, 340|
|CAC1086||xylR||Transcriptional regulators of NagC/XylR family (NCBI ptt file)||133, 340|
|CAC1231||CAC1231||Predicted dehydrogenase, YULF B.subtilis ortholog (NCBI ptt file)||133, 340|
|CAC1319||glpF||Glycerol uptake facilitator protein, GLPF (NCBI ptt file)||4, 133|
|CAC1339||araE||Possible sugar-proton symporter (NCBI ptt file)||133, 340|
|CAC1406||CAC1406||Transcriptional antiterminator (BglG family) (NCBI ptt file)||86, 133|
|CAC1442||CAC1442||Hypothetical protein (NCBI ptt file)||270, 317|
|CAC1446||CAC1446||Hypothetical protein (NCBI ptt file)||123, 270|
|CAC1650||CAC1650||Hypothetical protein, CF-38 family (NCBI ptt file)||123, 270|
|CAC1659||CAC1659||Predicted membrane protein (NCBI ptt file)||270, 282|
|CAC1741||CAC1741||Uncharacterized conserved protein, YLBM B.subtilis ortholog (NCBI ptt file)||151, 270|
|CAC1763||CAC1763||Predicted endonuclease (NCBI ptt file)||166, 270|
|CAC1947||CAC1947||Phage related transcriptional regulator (Xre family) (NCBI ptt file)||270, 272|
|CAC2020||moeA||Molybdopterin biosynthesis enzyme, MoeA, fused to molibdopterin-binding domain (NCBI ptt file)||133, 340|
|CAC2021||moeA||Molybdopterin biosynthesis enzyme, MoeA (short form) (NCBI ptt file)||133, 209|
|CAC2027||CAC2027||Hypothetical protein (NCBI ptt file)||270, 328|
|CAC2030||CAC2030||Hypothetical protein (NCBI ptt file)||270, 281|
|CAC2054||CAC2054||Hypothetical protein (NCBI ptt file)||270, 313|
|CAC2097||CAC2097||Hypothetical protein (NCBI ptt file)||270, 317|
|CAC2099||CAC2099||Hypothetical protein (NCBI ptt file)||270, 320|
|CAC2114||CAC2114||Predicted pseudouridylate synthase, YLYB B.subtilis ortholog (NCBI ptt file)||26, 270|
|CAC2247||CAC2247||Site-specific recombinase, DNA invertase Pin homolog (NCBI ptt file)||270, 301|
|CAC2259||CAC2259||Predicted transcriptional regulator of MarR-family (NCBI ptt file)||270, 351|
|CAC2492||CAC2492||Predicted membrane, YNAG B.subtilis ortholog (NCBI ptt file)||270, 294|
|CAC2512||CAC2512||Hypothetical protein (NCBI ptt file)||133, 270|
|CAC2609||CAC2609||Cytidine deaminase family enzyme (NCBI ptt file)||270, 320|
|CAC2668||CAC2668||Hypothetical protein (NCBI ptt file)||270, 317|
|CAC2806||CAC2806||Predicted phosphohydrolase, Icc family (NCBI ptt file)||133, 340|
|CAC2807||CAC2807||Endo-1,3(4)-beta-glucanase family 16 (NCBI ptt file)||133, 340|
|CAC2809||CAC2809||Predicted HD superfamily hydrolase (NCBI ptt file)||133, 340|
|CAC2835||gntP||Gluconate permease, gntP (NCBI ptt file)||270, 288|
|CAC2918||pmi||Mannose-6 phospate isomelase (NCBI ptt file)||270, 360|
|CAC3425||glvC||PTS system, (possibly glucose-specific) IIBC component (NCBI ptt file)||133, 170|
|CAC3567||topB||Topoisomerase B (NCBI ptt file)||66, 270|
|CAC3628||oppF||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||270, 294|
|CAC3629||oppD||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||270, 294|
|CAC3670||amyC||Sugar permease (NCBI ptt file)||133, 340|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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