Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2918(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2918
Module neighborhood information for CAC2918
|Gene||Common Name||Description||Module membership|
|CAC0132||CAC0132||Hypothetical protein (NCBI ptt file)||247, 270|
|CAC0423||CAC0423||Fusion: PTS system, beta-glucosides specific IIABC component (NCBI ptt file)||284, 360|
|CAC0425||sacA||Sucrase-6-phosphate hydrolase (gene sacA) (NCBI ptt file)||92, 360|
|CAC0570||CAC0570||PTS enzyme II, ABC component (NCBI ptt file)||237, 360|
|CAC0619||CAC0619||Nitrate ABC transporter ATP binding protein (NCBI ptt file)||190, 270|
|CAC0644||gerKA||Spore germination protein gerKA (NCBI ptt file)||324, 360|
|CAC0766||CAC0766||Predicted transcriptional regulator (MerR family) (NCBI ptt file)||116, 360|
|CAC0886||CAC0886||Hypothetical protein (NCBI ptt file)||207, 270|
|CAC0925||CAC0925||TPR-repeat-containing protein (NCBI ptt file)||53, 270|
|CAC0926||CAC0926||TPR-repeat-containing protein (NCBI ptt file)||123, 270|
|CAC1396||purD||Phosphoribosylamine-glycine ligase (NCBI ptt file)||249, 360|
|CAC1442||CAC1442||Hypothetical protein (NCBI ptt file)||270, 317|
|CAC1446||CAC1446||Hypothetical protein (NCBI ptt file)||123, 270|
|CAC1595||CAC1595||Integrase/recombinase, XerC/XerD family (NCBI ptt file)||249, 360|
|CAC1630||CAC1630||Zn-dependent peptidase from MPP family (NCBI ptt file)||22, 360|
|CAC1650||CAC1650||Hypothetical protein, CF-38 family (NCBI ptt file)||123, 270|
|CAC1659||CAC1659||Predicted membrane protein (NCBI ptt file)||270, 282|
|CAC1741||CAC1741||Uncharacterized conserved protein, YLBM B.subtilis ortholog (NCBI ptt file)||151, 270|
|CAC1761||CAC1761||Predicted GTPase, YLQF B.subtilis ortholog (NCBI ptt file)||116, 360|
|CAC1763||CAC1763||Predicted endonuclease (NCBI ptt file)||166, 270|
|CAC1789||smbA/pyrH||Uridylate kinase (NCBI ptt file)||310, 360|
|CAC1947||CAC1947||Phage related transcriptional regulator (Xre family) (NCBI ptt file)||270, 272|
|CAC2027||CAC2027||Hypothetical protein (NCBI ptt file)||270, 328|
|CAC2030||CAC2030||Hypothetical protein (NCBI ptt file)||270, 281|
|CAC2054||CAC2054||Hypothetical protein (NCBI ptt file)||270, 313|
|CAC2097||CAC2097||Hypothetical protein (NCBI ptt file)||270, 317|
|CAC2099||CAC2099||Hypothetical protein (NCBI ptt file)||270, 320|
|CAC2114||CAC2114||Predicted pseudouridylate synthase, YLYB B.subtilis ortholog (NCBI ptt file)||26, 270|
|CAC2247||CAC2247||Site-specific recombinase, DNA invertase Pin homolog (NCBI ptt file)||270, 301|
|CAC2259||CAC2259||Predicted transcriptional regulator of MarR-family (NCBI ptt file)||270, 351|
|CAC2492||CAC2492||Predicted membrane, YNAG B.subtilis ortholog (NCBI ptt file)||270, 294|
|CAC2512||CAC2512||Hypothetical protein (NCBI ptt file)||133, 270|
|CAC2609||CAC2609||Cytidine deaminase family enzyme (NCBI ptt file)||270, 320|
|CAC2617||CAC2617||Membrane associated methyl-chemotaxis protein, HAMP domain containing (NCBI ptt file)||66, 360|
|CAC2626||fabG||Possible 3-ketoacyl-acyl carrier protein reductase (NCBI ptt file)||310, 360|
|CAC2627||CAC2627||Predicted S-adenosylmethionine-dependent methyltransferase, YtmQ B.subtilis ortholog (NCBI ptt file)||310, 360|
|CAC2628||CAC2628||Predicted metal-dependent peptidase (NCBI ptt file)||310, 360|
|CAC2650||pyrD||Dihydroorotate dehydrogenase (NCBI ptt file)||116, 360|
|CAC2652||pyrF||Orotidine-5'-phosphate decarboxylase (NCBI ptt file)||116, 360|
|CAC2653||pyrI||Aspartate carbamoyltransferase regulatory subunit (NCBI ptt file)||116, 360|
|CAC2654||CAC2654||Aspartate carbamoyltransferase catalytic subunit (NCBI ptt file)||116, 360|
|CAC2668||CAC2668||Hypothetical protein (NCBI ptt file)||270, 317|
|CAC2835||gntP||Gluconate permease, gntP (NCBI ptt file)||270, 288|
|CAC2918||pmi||Mannose-6 phospate isomelase (NCBI ptt file)||270, 360|
|CAC2936||CAC2936||Alpha/beta superfamily hydrolase (NCBI ptt file)||236, 360|
|CAC3095||thiK||Hydroxyethylthiazole kinase ThiM/ThiK (FS!) (NCBI ptt file)||353, 360|
|CAC3332||CAC3332||Predicted amidohydrolase (dihydroorothase family) (NCBI ptt file)||150, 360|
|CAC3356||CAC3356||Lactoylglutathione lyase (LGUL) family protein, diverged (NCBI ptt file)||236, 360|
|CAC3440||CAC3440||Hypothetical protein (NCBI ptt file)||353, 360|
|CAC3567||topB||Topoisomerase B (NCBI ptt file)||66, 270|
|CAC3628||oppF||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||270, 294|
|CAC3629||oppD||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||270, 294|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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