Organism : Clostridium acetobutylicum | Module List :
Electron-transferring flavoprotein large subunit (NCBI ptt file)
Functional Annotations (4)
|Electron transfer flavoprotein, alpha subunit||cog/ cog|
|electron transport||go/ biological_process|
|electron carrier activity||go/ molecular_function|
|flavin adenine dinucleotide binding||go/ molecular_function|
Regulation information for CAC2543(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2543
Module neighborhood information for CAC2543
|Gene||Common Name||Description||Module membership|
|CAC0092||CAC0092||Uncharacterized predicted membrane protein, YTWI B.subtilis ortholog (NCBI ptt file)||305, 363|
|CAC0144||sfsa||Sugar fermentation-stimulation protein (NCBI ptt file)||154, 363|
|CAC0280||CAC0280||Molybdate transport system, permease component (NCBI ptt file)||317, 363|
|CAC0281||CAC0281||Molybdate-binding periplasmic protein (NCBI ptt file)||363, 366|
|CAC0297||CAC0297||Lysine decarboxylase (NCBI ptt file)||73, 363|
|CAC0473||dnaK||DnaK protein (heat shock protein), C-terminal region has VWA type A domain (NCBI ptt file)||14, 41|
|CAC0480||nrdD||Oxygen-sensitive ribonucleoside-triphosphate reductase nrdD (NCBI ptt file)||73, 363|
|CAC0512||CAC0512||Uncharacterized conserved protein, YbhK/UPF0052 family (NCBI ptt file)||41, 343|
|CAC0513||CAC0513||Uncharacterized conserved protein, similar to B.subtilis yvcL (NCBI ptt file)||41, 154|
|CAC0531||CAC0531||Transcriptional regulator, RpiR family (NCBI ptt file)||41, 64|
|CAC0713||eno||Enolase (NCBI ptt file)||128, 363|
|CAC0715||vacB||FUSION ribonuclease and ribosomal protein S1 domain (NCBI ptt file)||313, 363|
|CAC0845||CAC0845||Ferritin-like protein Rsg (NCBI ptt file)||65, 363|
|CAC0959||clpB||ATPase with chaperone activity, two ATP-binding domains (NCBI ptt file)||6, 41|
|CAC1304||CAC1304||Uncharacterized conserved protein, predicted metal-binding (NCBI ptt file)||113, 363|
|CAC1324||CAC1324||Uncharacterized predected metal-binding protein (NCBI ptt file)||204, 363|
|CAC1426||CAC1426||Possible transcriptional regulator from leucine-rich protein (LRPR) family (NCBI ptt file)||47, 363|
|CAC1474||CAC1474||Proline/glycine betaine ABC transport system, periplasmic component (NCBI ptt file)||41, 177|
|CAC1475||CAC1475||Proline/glycine betaine ABC transport system, ATPase component (NCBI ptt file)||41, 177|
|CAC1553||CAC1553||Membrane associated sensory transduction histidine kinase (with HAMP domain) (NCBI ptt file)||41, 265|
|CAC1665||CAC1665||Predicted amidohydrolase (NCBI ptt file)||41, 113|
|CAC1964||rpsA||Ribosomal protein S1 (NCBI ptt file)||41, 47|
|CAC1979||CAC1979||Predicted membrane protein (NCBI ptt file)||113, 363|
|CAC2052||CAC2052||DNA-dependent RNA polymerase sigma subunit (NCBI ptt file)||41, 64|
|CAC2053||CAC2053||Hypothetical protein (NCBI ptt file)||41, 64|
|CAC2143||sigD||Sigma factor of SigD/WhiG family (NCBI ptt file)||14, 41|
|CAC2144||CAC2144||Uncharacterized protein, YPFA B.subtilis ortholog (NCBI ptt file)||14, 41|
|CAC2145||CAC2145||ATPases involved in chromosome partitioning, MinD family, YLXH B.subtilis ortholog (NCBI ptt file)||14, 41|
|CAC2233||CAC2233||TRNA 5-methylaminomethyl-2-thiouridylate)-methyltransferase, PP-loop ATPase (NCBI ptt file)||329, 363|
|CAC2354||CAC2354||Nifs family aminotransferase (NCBI ptt file)||41, 279|
|CAC2458||CAC2458||2-oxoacid ferredoxin oxidoreductase, beta subunit (NCBI ptt file)||41, 200|
|CAC2542||CAC2542||FAD/FMN-containing dehydrogenase (NCBI ptt file)||41, 265|
|CAC2543||etfA||Electron-transferring flavoprotein large subunit (NCBI ptt file)||41, 363|
|CAC2544||etfB||Electron-transferring flavoprotein small subunit (NCBI ptt file)||41, 291|
|CAC2625||CAC2625||Predicted membrane protein (NCBI ptt file)||41, 113|
|CAC2638||lonB||Lon-like ATP-dependent protease (NCBI ptt file)||41, 177|
|CAC2921||thiH||Thiamine biosynthesis enzyme, thiH (NCBI ptt file)||208, 363|
|CAC2923||CAC2923||Dinucleotide-utilizing enzyme involved in molybdopterin/thiamine biosynthesis (NCBI ptt file)||208, 363|
|CAC2945||CAC2945||Possible phosphoglycerate dehydrogenase (NCBI ptt file)||279, 363|
|CAC2946||CAC2946||Hypothetical protein (NCBI ptt file)||345, 363|
|CAC2977||gatA||Glutamyl-tRNAGln amidotransferase subunit A (NCBI ptt file)||221, 363|
|CAC3030||CAC3030||Hypothetical protein (NCBI ptt file)||41, 265|
|CAC3080||CAC3080||Hypothetical protein (NCBI ptt file)||39, 41|
|CAC3648||CAC3648||Acetyltransferase (with duplicated domains), possibly RIMI-like protein (NCBI ptt file)||73, 363|
|CAC3652||alsS||Acetolactate synthase (NCBI ptt file)||47, 363|
|CAC3658||CAC3658||Uncharacterized conserved membrane protein, SapB/MtgC family (NCBI ptt file)||41, 272|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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