Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2928(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2928
Module neighborhood information for CAC2928
|Gene||Common Name||Description||Module membership|
|CAC0174||CAC0174||Response regulator, CheY-like receiver domain and HTH DNA-binding domain (NCBI ptt file)||140, 283|
|CAC0235||CAC0235||Chloramphenicol acetyltransferase (NCBI ptt file)||140, 346|
|CAC0236||CAC0236||ABC-type multidrug transport system, ATP-ase component (NCBI ptt file)||140, 346|
|CAC0451||CAC0451||Sensory transduction histidine kinase (HAMP, HisKA, HATPase domains) (NCBI ptt file)||13, 140|
|CAC0589||birA||Biotin-(acetyl-CoA carboxylase)ligase (NCBI ptt file)||13, 140|
|CAC0968||CAC0968||Hypothetical protein (NCBI ptt file)||140, 346|
|CAC1005||CAC1005||Uncharacterized protein similar to Cylindrotheca fusiformis plasmid hypothetical protein (GI:99319) (NCBI ptt file)||74, 140|
|CAC1049||CAC1049||Uncharacterized conserved protein,ortholog of YaaR B.subtilis (NCBI ptt file)||117, 158|
|CAC1076||CAC1076||Hypothetical protein, CF-32 family (NCBI ptt file)||140, 346|
|CAC1438||CAC1438||Hypothetical protein (NCBI ptt file)||113, 158|
|CAC1439||CAC1439||Uncharacterized conserved protein (NCBI ptt file)||115, 158|
|CAC1440||CAC1440||Hypothetical protein (NCBI ptt file)||115, 158|
|CAC1451||CAC1451||AraC-type DNA-binding domain-containing protein (NCBI ptt file)||80, 140|
|CAC1481||CAC1481||Transcriptional regulator, LysR family (NCBI ptt file)||140, 158|
|CAC1482||CAC1482||Uncharacterized membrane protein,ortholog of YDFK B.subtilis (NCBI ptt file)||158, 346|
|CAC1499||CAC1499||A/G-specific DNA glycosylase (NCBI ptt file)||140, 158|
|CAC1504||CAC1504||MDR-type permease (NCBI ptt file)||140, 158|
|CAC1506||phoP||Response regulator (CheY-like receiver domain and a HTH) (NCBI ptt file)||140, 149|
|CAC1516||CAC1516||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||140, 287|
|CAC1517||CAC1517||Membrane associated sensory transduction histidine kinase (NCBI ptt file)||140, 351|
|CAC1643||CAC1643||Hypothetical protein, CF-38 family (NCBI ptt file)||115, 140|
|CAC1771||CAC1771||Uncharacterized protein, ykrI B.subtilis homolog (NCBI ptt file)||73, 158|
|CAC2055||CAC2055||Predicted transcriptional regulator (NCBI ptt file)||158, 345|
|CAC2364||CAC2364||Uncharacterized protein, homolog of gi|2274936 Eubacterium acidaminophilum (NCBI ptt file)||158, 261|
|CAC2418||CAC2418||Uncharacterized conserved membrane protein (NCBI ptt file)||117, 158|
|CAC2496||CAC2496||Predicted phosphatase of HAD hydrolase superfamily (NCBI ptt file)||158, 261|
|CAC2608||CAC2608||Trancriptional regulator of AraC family (NCBI ptt file)||117, 158|
|CAC2694||CAC2694||Hypothetical protein (NCBI ptt file)||158, 345|
|CAC2755||CAC2755||MDR-type ABC transporter (membrane associated ATPase) (NCBI ptt file)||140, 176|
|CAC2928||CAC2928||Predicted membrane protein (NCBI ptt file)||140, 158|
|CAC3349||CAC3349||Transcriptional regulator, LysR family (NCBI ptt file)||66, 140|
|CAC3374||CAC3374||Predicted acetyltransferase (NCBI ptt file)||140, 162|
|CAC3406||CAC3406||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||140, 344|
|CAC3424||CAC3424||Transcriptional regulator, RpiR family (NCBI ptt file)||158, 345|
|CAC3512||CAC3512||AraC-type DNA-binding domain-containing protein (NCBI ptt file)||74, 140|
|CAC3519||CAC3519||Predicted membrane protein, possible permease (NCBI ptt file)||158, 207|
|CAC3520||CAC3520||ABC-type transport system, ATPase component (NCBI ptt file)||158, 207|
|CAC3611||CAC3611||Regulatory protein related to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) (NCBI ptt file)||117, 158|
|CAC3614||CAC3614||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3615||CAC3615||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3616||CAC3616||ABC transport system, ATPase component (NCBI ptt file)||115, 158|
|CAC3687||CAC3687||Transcriptional regulator, AcrR family (NCBI ptt file)||140, 259|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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