Organism : Clostridium acetobutylicum | Module List :
Biotin-(acetyl-CoA carboxylase)ligase (NCBI ptt file)
Functional Annotations (4)
|Biotin-(acetyl-CoA carboxylase) ligase||cog/ cog|
|biotin-[acetyl-CoA-carboxylase] ligase activity||go/ molecular_function|
|protein modification process||go/ biological_process|
Regulation information for CAC0589(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0589
Module neighborhood information for CAC0589
|Gene||Common Name||Description||Module membership|
|CAC0135||CAC0135||Hypothetical protein, CF-23 family (NCBI ptt file)||13, 247|
|CAC0174||CAC0174||Response regulator, CheY-like receiver domain and HTH DNA-binding domain (NCBI ptt file)||140, 283|
|CAC0235||CAC0235||Chloramphenicol acetyltransferase (NCBI ptt file)||140, 346|
|CAC0236||CAC0236||ABC-type multidrug transport system, ATP-ase component (NCBI ptt file)||140, 346|
|CAC0248||CAC0248||Transposon related protein (NCBI ptt file)||13, 117|
|CAC0325||CAC0325||Uncharacterized membrane protein, homolog of YtaF B.subtilis (NCBI ptt file)||13, 117|
|CAC0450||CAC0450||Response regulator (CheY-like and HTH domains) (NCBI ptt file)||13, 66|
|CAC0451||CAC0451||Sensory transduction histidine kinase (HAMP, HisKA, HATPase domains) (NCBI ptt file)||13, 140|
|CAC0589||birA||Biotin-(acetyl-CoA carboxylase)ligase (NCBI ptt file)||13, 140|
|CAC0778||CAC0778||ATP-dependent RNA helicase, superfamily II (NCBI ptt file)||13, 66|
|CAC0820||CAC0820||Conserved protein, ortholog YwqG B.subtilis (NCBI ptt file)||13, 66|
|CAC0968||CAC0968||Hypothetical protein (NCBI ptt file)||140, 346|
|CAC1005||CAC1005||Uncharacterized protein similar to Cylindrotheca fusiformis plasmid hypothetical protein (GI:99319) (NCBI ptt file)||74, 140|
|CAC1012||CAC1012||Uncharacterized membrane protein, homolog of YNGA/YWCD B.suntilis (NCBI ptt file)||13, 69|
|CAC1076||CAC1076||Hypothetical protein, CF-32 family (NCBI ptt file)||140, 346|
|CAC1371||CAC1371||Possible kinase, diverged (NCBI ptt file)||13, 55|
|CAC1381||cbiJ/cobK||precorrin-6x reductase (NCBI ptt file)||13, 55|
|CAC1451||CAC1451||AraC-type DNA-binding domain-containing protein (NCBI ptt file)||80, 140|
|CAC1481||CAC1481||Transcriptional regulator, LysR family (NCBI ptt file)||140, 158|
|CAC1499||CAC1499||A/G-specific DNA glycosylase (NCBI ptt file)||140, 158|
|CAC1500||CAC1500||Predicted membrane protein (NCBI ptt file)||13, 351|
|CAC1504||CAC1504||MDR-type permease (NCBI ptt file)||140, 158|
|CAC1506||phoP||Response regulator (CheY-like receiver domain and a HTH) (NCBI ptt file)||140, 149|
|CAC1516||CAC1516||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||140, 287|
|CAC1517||CAC1517||Membrane associated sensory transduction histidine kinase (NCBI ptt file)||140, 351|
|CAC1643||CAC1643||Hypothetical protein, CF-38 family (NCBI ptt file)||115, 140|
|CAC2348||CAC2348||Glycosyltransferase (NCBI ptt file)||13, 312|
|CAC2349||CAC2349||Hypothetical protein (NCBI ptt file)||13, 100|
|CAC2453||CAC2453||CBS domain containing protein (NCBI ptt file)||13, 346|
|CAC2478||CAC2478||Predicted conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||13, 149|
|CAC2554||CAC2554||Hypothetical protein (NCBI ptt file)||13, 346|
|CAC2555||CAC2555||Hypothetical protein (NCBI ptt file)||13, 149|
|CAC2755||CAC2755||MDR-type ABC transporter (membrane associated ATPase) (NCBI ptt file)||140, 176|
|CAC2907||CAC2907||Glycosyltransferase (NCBI ptt file)||13, 117|
|CAC2928||CAC2928||Predicted membrane protein (NCBI ptt file)||140, 158|
|CAC3091||CAC3091||Fumarate hydratase, subunit A (N-terminal domain of FumA E.coli) class I (NCBI ptt file)||3, 13|
|CAC3240||CAC3240||Predicted membrane protein (NCBI ptt file)||13, 150|
|CAC3265||CAC3265||Predicted membrane protein (NCBI ptt file)||13, 99|
|CAC3349||CAC3349||Transcriptional regulator, LysR family (NCBI ptt file)||66, 140|
|CAC3374||CAC3374||Predicted acetyltransferase (NCBI ptt file)||140, 162|
|CAC3406||CAC3406||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||140, 344|
|CAC3512||CAC3512||AraC-type DNA-binding domain-containing protein (NCBI ptt file)||74, 140|
|CAC3587||CAC3587||DNA replication protein DnaD (NCBI ptt file)||13, 287|
|CAC3596||pgsA||Phosphatidylglycerophosphate synthase (NCBI ptt file)||13, 99|
|CAC3687||CAC3687||Transcriptional regulator, AcrR family (NCBI ptt file)||140, 259|
|CAC3692||CAC3692||Hypothetical protein (NCBI ptt file)||13, 196|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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