Organism : Clostridium acetobutylicum | Module List :
Sensory transduction protein with GGDEF and EAL domains (NCBI ptt file)
Functional Annotations (5)
|FOG: EAL domain||cog/ cog|
|cyclic nucleotide biosynthetic process||go/ biological_process|
|phosphorus-oxygen lyase activity||go/ molecular_function|
|intracellular signal transduction||go/ biological_process|
Regulation information for CAC3019(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC3019
Module neighborhood information for CAC3019
|Gene||Common Name||Description||Module membership|
|CAC0019||CAC0019||Transcriptional regulator, AcrR family (NCBI ptt file)||73, 341|
|CAC0297||CAC0297||Lysine decarboxylase (NCBI ptt file)||73, 363|
|CAC0480||nrdD||Oxygen-sensitive ribonucleoside-triphosphate reductase nrdD (NCBI ptt file)||73, 363|
|CAC0486||CAC0486||Hypothetical protein (NCBI ptt file)||73, 367|
|CAC0525||CAC0525||Sensory transduction histidine kinase (HisKA and HATPase_c domains) (NCBI ptt file)||70, 73|
|CAC0642||CAC0642||Conserved domain seen in the bacterial SpoT (NCBI ptt file)||73, 367|
|CAC0681||nrgB||Nitrogen regulatory protein PII, gene nrgB (NCBI ptt file)||235, 367|
|CAC0787||CAC0787||Uncharacterized conserved protein, repeats (NCBI ptt file)||73, 154|
|CAC0803||CAC0803||Hypothetical protein (NCBI ptt file)||328, 367|
|CAC0841||CAC0841||Predicted transcriptional regulator (NCBI ptt file)||15, 367|
|CAC0992||CAC0992||Hypothetical protein (NCBI ptt file)||73, 281|
|CAC1020||CAC1020||Hypothetical protein (NCBI ptt file)||80, 367|
|CAC1034||CAC1034||Hypothetical protein (NCBI ptt file)||73, 294|
|CAC1055||CAC1055||Hypothetical protein (NCBI ptt file)||38, 367|
|CAC1253||CAC1253||Sporulation protein IVFB related protein, predicted metallopeptidase (NCBI ptt file)||95, 367|
|CAC1486||CAC1486||Uncharacterized protein, ortholog of YKUS B.subtilis (NCBI ptt file)||118, 367|
|CAC1509||CAC1509||Specialized sigma subunit of RNA polymerase (NCBI ptt file)||305, 367|
|CAC1567||CAC1567||Hypothetical protein (NCBI ptt file)||95, 367|
|CAC1606||CAC1606||Uncharacterized conserved protein (NCBI ptt file)||4, 73|
|CAC1653||CAC1653||Predicted glycosyltransferases involved in cell wall biogenesis (NCBI ptt file)||73, 118|
|CAC1658||CAC1658||Phospholipase D family protein (NCBI ptt file)||73, 326|
|CAC1663||CAC1663||Hypothetical protein (NCBI ptt file)||73, 366|
|CAC1771||CAC1771||Uncharacterized protein, ykrI B.subtilis homolog (NCBI ptt file)||73, 158|
|CAC1817||CAC1817||Stage V sporulation protein, spoVS (NCBI ptt file)||38, 73|
|CAC1831||CAC1831||Protein containing Zn-finger domain (NCBI ptt file)||29, 73|
|CAC1841||CAC1841||Uncharacterized protein, related to Spore coat protein CotS (NCBI ptt file)||73, 269|
|CAC2287||CAC2287||Acyl-CoA reductase LuxC (NCBI ptt file)||73, 345|
|CAC2465||CAC2465||Uncharacterized conserved protein (NCBI ptt file)||73, 367|
|CAC2480||CAC2480||Predicted acetyltransferase (NCBI ptt file)||73, 228|
|CAC2488||CAC2488||Uncharacterized conserved protein, YTFE family (NCBI ptt file)||285, 367|
|CAC2789||CAC2789||Hypothetical protein (NCBI ptt file)||73, 289|
|CAC2802||CAC2802||Predicted phosphoglycerol transferase (alkaline phosphatase superfamily), YFNI B.subtilis (NCBI ptt file)||73, 367|
|CAC2876||CAC2876||Deoxycytidylate deaminase (NCBI ptt file)||15, 367|
|CAC2919||CAC2919||Hypothetical protein (NCBI ptt file)||24, 73|
|CAC3019||CAC3019||Sensory transduction protein with GGDEF and EAL domains (NCBI ptt file)||73, 367|
|CAC3175||CAC3175||Hypothetical protein (NCBI ptt file)||73, 292|
|CAC3176||ilvN||Acetolactate synthase, small subunit (NCBI ptt file)||29, 367|
|CAC3205||spoIIE||Stage II sporulation protein E, serine phosphatase family (NCBI ptt file)||42, 367|
|CAC3393||CAC3393||Hypothetical protein (NCBI ptt file)||80, 367|
|CAC3427||CAC3427||PTS system, (possibly glucose-specific) IIA component (NCBI ptt file)||73, 366|
|CAC3648||CAC3648||Acetyltransferase (with duplicated domains), possibly RIMI-like protein (NCBI ptt file)||73, 363|
|CAC3654||CAC3654||Heavy-metal binding protein (similar to N-terminal domain of MerA) (NCBI ptt file)||73, 320|
|CAC3727||CAC3727||Uncharacterized protein, YYAC B.subtilis homolog (NCBI ptt file)||95, 367|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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