Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0787(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0787
Module neighborhood information for CAC0787
|Gene||Common Name||Description||Module membership|
|CAC0019||CAC0019||Transcriptional regulator, AcrR family (NCBI ptt file)||73, 341|
|CAC0144||sfsa||Sugar fermentation-stimulation protein (NCBI ptt file)||154, 363|
|CAC0245||CAC0245||ABC transporter ATP-binding protein (NCBI ptt file)||154, 220|
|CAC0296||csfB||Zn-finger containing protein, csfB B.subtilis homolog (NCBI ptt file)||64, 154|
|CAC0297||CAC0297||Lysine decarboxylase (NCBI ptt file)||73, 363|
|CAC0480||nrdD||Oxygen-sensitive ribonucleoside-triphosphate reductase nrdD (NCBI ptt file)||73, 363|
|CAC0486||CAC0486||Hypothetical protein (NCBI ptt file)||73, 367|
|CAC0502||uvrB||Excinuclease ABC subunit B (helicase subunit of the DNA excision repair complex) (NCBI ptt file)||154, 335|
|CAC0503||uvrA||Excinuclease ABC subunit A (ATP-ase), (uvrA) (NCBI ptt file)||154, 335|
|CAC0513||CAC0513||Uncharacterized conserved protein, similar to B.subtilis yvcL (NCBI ptt file)||41, 154|
|CAC0524||CAC0524||Response regulator (CheY-like and HTH domains) (NCBI ptt file)||154, 230|
|CAC0525||CAC0525||Sensory transduction histidine kinase (HisKA and HATPase_c domains) (NCBI ptt file)||70, 73|
|CAC0526||CAC0526||ABC transporter, ATPase component (NCBI ptt file)||154, 230|
|CAC0527||CAC0527||Predicted permease, domain duplication (NCBI ptt file)||70, 154|
|CAC0642||CAC0642||Conserved domain seen in the bacterial SpoT (NCBI ptt file)||73, 367|
|CAC0717||CAC0717||Predicted membrane protein (NCBI ptt file)||154, 230|
|CAC0748||CAC0748||Nitroreductase family protein (NCBI ptt file)||154, 255|
|CAC0749||CAC0749||HD hydrolase superfamily protein (NCBI ptt file)||154, 291|
|CAC0786||CAC0786||Uncharacterized conserved protein, repeats (NCBI ptt file)||154, 236|
|CAC0787||CAC0787||Uncharacterized conserved protein, repeats (NCBI ptt file)||73, 154|
|CAC0905||CAC0905||Uncharacterized NAD(FAD)-dependent dehydrogenase (NCBI ptt file)||65, 154|
|CAC0906||CAC0906||Alanyl-tRNA synthetase related protein (NCBI ptt file)||113, 154|
|CAC0992||CAC0992||Hypothetical protein (NCBI ptt file)||73, 281|
|CAC1004||CAC1004||Predicted membrane protein (NCBI ptt file)||154, 230|
|CAC1034||CAC1034||Hypothetical protein (NCBI ptt file)||73, 294|
|CAC1606||CAC1606||Uncharacterized conserved protein (NCBI ptt file)||4, 73|
|CAC1653||CAC1653||Predicted glycosyltransferases involved in cell wall biogenesis (NCBI ptt file)||73, 118|
|CAC1658||CAC1658||Phospholipase D family protein (NCBI ptt file)||73, 326|
|CAC1663||CAC1663||Hypothetical protein (NCBI ptt file)||73, 366|
|CAC1771||CAC1771||Uncharacterized protein, ykrI B.subtilis homolog (NCBI ptt file)||73, 158|
|CAC1817||CAC1817||Stage V sporulation protein, spoVS (NCBI ptt file)||38, 73|
|CAC1831||CAC1831||Protein containing Zn-finger domain (NCBI ptt file)||29, 73|
|CAC1841||CAC1841||Uncharacterized protein, related to Spore coat protein CotS (NCBI ptt file)||73, 269|
|CAC2287||CAC2287||Acyl-CoA reductase LuxC (NCBI ptt file)||73, 345|
|CAC2465||CAC2465||Uncharacterized conserved protein (NCBI ptt file)||73, 367|
|CAC2480||CAC2480||Predicted acetyltransferase (NCBI ptt file)||73, 228|
|CAC2607||CAC2607||Short-chain alcohol dehydrogenase family protein (NCBI ptt file)||154, 230|
|CAC2737||sbcD||DNA repair exonuclease (NCBI ptt file)||154, 230|
|CAC2763||CAC2763||Membrane assosiated methyl-accepting chemotaxis protein with HAMP domain (NCBI ptt file)||154, 230|
|CAC2789||CAC2789||Hypothetical protein (NCBI ptt file)||73, 289|
|CAC2802||CAC2802||Predicted phosphoglycerol transferase (alkaline phosphatase superfamily), YFNI B.subtilis (NCBI ptt file)||73, 367|
|CAC2824||CAC2824||N-terminal HKD family nuclease fused to DNA/RNA helicases of superfamily II,conserved in Streptomyces (NCBI ptt file)||154, 247|
|CAC2825||CAC2825||Uncharacterized conserved protein, YQXD B.subtilis ortholog (NCBI ptt file)||154, 230|
|CAC2919||CAC2919||Hypothetical protein (NCBI ptt file)||24, 73|
|CAC2947||topB||Topoisomerase B (NCBI ptt file)||65, 154|
|CAC3019||CAC3019||Sensory transduction protein with GGDEF and EAL domains (NCBI ptt file)||73, 367|
|CAC3175||CAC3175||Hypothetical protein (NCBI ptt file)||73, 292|
|CAC3302||gerKC||Spore germination protein GerKC, membrane protein (NCBI ptt file)||154, 230|
|CAC3330||CAC3330||Cytochrome P450 family protein, YBDT B.subtilis ortholog (NCBI ptt file)||154, 300|
|CAC3427||CAC3427||PTS system, (possibly glucose-specific) IIA component (NCBI ptt file)||73, 366|
|CAC3648||CAC3648||Acetyltransferase (with duplicated domains), possibly RIMI-like protein (NCBI ptt file)||73, 363|
|CAC3654||CAC3654||Heavy-metal binding protein (similar to N-terminal domain of MerA) (NCBI ptt file)||73, 320|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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