Organism : Campylobacter jejuni | Module List :
Regulation information for Cj0851c(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for Cj0851c
|Gene||Common Name||Description||Module membership|
|Cj0005c||Cj0005c||putative molybdenum containing oxidoreductase (NCBI ptt file)||39, 81|
|Cj0014c||Cj0014c||putative integral membrane protein (NCBI ptt file)||39, 135|
|Cj0015c||Cj0015c||hypothetical protein Cj0015c (NCBI ptt file)||39, 62|
|Cj0063c||Cj0063c||putative ATP-binding protein (NCBI ptt file)||35, 120|
|Cj0077c||cdtC||cytolethal distending toxin (NCBI ptt file)||39, 95|
|Cj0104||atpH||ATP synthase F1 sector delta subunit (NCBI ptt file)||95, 120|
|Cj0113||pal||peptidoglycan associated lipoprotein (omp18) (NCBI ptt file)||91, 120|
|Cj0260c||Cj0260c||small hydrophobic protein (NCBI ptt file)||39, 158|
|Cj0272||Cj0272||hypothetical protein Cj0272 (NCBI ptt file)||39, 158|
|Cj0297c||panC||pantoate--beta-alanine ligase (NCBI ptt file)||33, 39|
|Cj0331c||Cj0331c||hypothetical protein Cj0331c (NCBI ptt file)||74, 120|
|Cj0338c||polA||DNA polymerase I (NCBI ptt file)||39, 44|
|Cj0410||frdB||fumarate reductase iron-sulfur protein (NCBI ptt file)||20, 120|
|Cj0439||sdhC||putative succinate dehydrogenase subunit C (NCBI ptt file)||20, 39|
|Cj0463||Cj0463||zinc protease-like protein (NCBI ptt file)||56, 120|
|Cj0552||Cj0552||hydrophobic protein (NCBI ptt file)||119, 120|
|Cj0553||Cj0553||putative integral membrane protein (NCBI ptt file)||119, 120|
|Cj0610c||Cj0610c||putative periplasmic protein (NCBI ptt file)||39, 81|
|Cj0611c||Cj0611c||putative transmembrane transport protein (NCBI ptt file)||39, 155|
|Cj0671||dcuB||putative anaerobic C4-dicarboxylate transporter (NCBI ptt file)||39, 86|
|Cj0687c||flgH||putative flagellar L-ring protein precursor (NCBI ptt file)||39, 86|
|Cj0723c||Cj0723c||putative integral membrane zinc-metalloprotease (NCBI ptt file)||39, 144|
|Cj0766c||tmk||putative thymidylate kinase (NCBI ptt file)||39, 62|
|Cj0785||napD||possible napD protein homolog (NCBI ptt file)||39, 94|
|Cj0840c||fbp||putative fructose-1,6-bisphosphatase (NCBI ptt file)||34, 39|
|Cj0851c||Cj0851c||putative integral membrane protein (NCBI ptt file)||39, 120|
|Cj0852c||Cj0852c||putative integral membrane protein (NCBI ptt file)||74, 120|
|Cj0854c||Cj0854c||putative periplasmic protein (NCBI ptt file)||63, 120|
|Cj0857c||moeA||putative molybdopterin biosynthesis protein (NCBI ptt file)||39, 116|
|Cj0911||Cj0911||putative periplasmic protein (NCBI ptt file)||39, 89|
|Cj0996||ribA||GTP cyclohydrolase II (NCBI ptt file)||120, 155|
|Cj1049c||Cj1049c||putative integral membrane protein (NCBI ptt file)||39, 51|
|Cj1111c||Cj1111c||putative integral membrane protein (NCBI ptt file)||39, 132|
|Cj1140||Cj1140||hypothetical protein Cj1140 (NCBI ptt file)||95, 120|
|Cj1293||Cj1293||possible sugar nucleotide epimerase/dehydratase (NCBI ptt file)||120, 130|
|Cj1294||Cj1294||putative aminotransferase (degT family) (NCBI ptt file)||120, 165|
|Cj1295||Cj1295||hypothetical protein Cj1295 (NCBI ptt file)||120, 165|
|Cj1297||Cj1297||hypotehtical protein Cj1297 (NCBI ptt file)||120, 165|
|Cj1299||acpP2||putative acyl carrier protein (NCBI ptt file)||120, 165|
|Cj1301||Cj1301||hypothetical protein Cj1301 (NCBI ptt file)||120, 132|
|Cj1305c||Cj1305c||hypothetical protein Cj1305c (617 family) (NCBI ptt file)||39, 121|
|Cj1306c||Cj1306c||hypothetical protein Cj1306c (617 family) (NCBI ptt file)||56, 120|
|Cj1387c||Cj1387c||helix-turn-helix containing protein (NCBI ptt file)||10, 39|
|Cj1412c||Cj1412c||putative integral membrane protein (NCBI ptt file)||10, 39|
|Cj1420c||Cj1420c||hypothetical protein Cj1420c (NCBI ptt file)||120, 127|
|Cj1448c||kpsM||putative capsule polysaccharide export system inner membrane protein (NCBI ptt file)||114, 120|
|Cj1455||prfB||peptide chain release factor 2 (NCBI ptt file)||56, 120|
|Cj1475c||Cj1475c||hypothetical protein Cj1475c (NCBI ptt file)||39, 45|
|Cj1536c||galU||UTP--glucose-1-phosphate uridylyltransferase (NCBI ptt file)||86, 120|
|Cj1541||Cj1541||hypothetical protein Cj1541 (NCBI ptt file)||119, 120|
|Cj1542||Cj1542||hypothetical protein Cj1542 (NCBI ptt file)||95, 120|
|Cj1585c||Cj1585c||putative oxidoreductase (NCBI ptt file)||34, 39|
|Cj1609||Cj1609||possible sulfate adenylyltransferase (NCBI ptt file)||10, 39|
|Cj1681c||cysQ||cysQ protein homolog (NCBI ptt file)||56, 120|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
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