22404 DEXDc superfamilyThalassiosira pseudonana

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22404	chr_4	DEXDc superfamily	1793532	1795499	-	DEXDc superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443752	Thaps22404.1, Thaps22404.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0257	0.20	5.4 79

Most Highly Correlated Transcripts

25484 hypothetical protein 0.9421	34006 Sun 0.9335	24016 Ebp2 superfamily 0.9311	bd190 (bd190) SrmB 0.928	29705 18S_RNA_Rcl1p 0.9276	32807 DEADc 0.9263
23202 RsuA 0.9257	268238 PRK05192 0.9238	bd1807 (bd1807) RRS1 superfamily 0.9177	34027 SrmB 0.9174

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HELICc superfamily	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	137.369	3.29E-38	388 - 519	superfamily	238034
HELICc superfamily	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	137.369	3.29E-38	388 - 519	superfamily	238034
DEXDc superfamily	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	-	167.276	6.28E-48	48 - 334	superfamily	266587
PTZ00424	helicase 45; Provisional	-	163.459	1.80E-44	41 - 533	multi-dom	185609

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
4875	PHATRDRAFT_16987	PHATRDRAFT_16987	231778	321039	53137	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0016818 GO:0019176 GO:0019177 -

GO:0003676

nucleic acid binding

Details:

Interacting selectively and non-covalently with any nucleic acid.

GO Category:

GO:0005524

ATP binding

Details:

Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

GO Category:

GO:0008026

ATP-dependent helicase activity

Details:

Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

GO Category:

GO:0004386

helicase activity

Details:

Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

GO Category:

GO:0000810

diacylglycerol diphosphate phosphatase activity

Details:

Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.

GO Category:

GO:0004787

thiamine-pyrophosphatase activity

Details:

Catalysis of the reaction: TDP + H2O = TMP + phosphate.

GO Category:

GO:0008722

Details:

GO Category:

GO:0008758

UDP-2,3-diacylglucosamine hydrolase activity

Details:

Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.

GO Category:

GO:0008796

bis(5'-nucleosyl)-tetraphosphatase activity

Details:

Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.

GO Category:

GO:0008828

dATP pyrophosphohydrolase activity

Details:

Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.

GO Category:

GO:0016462

pyrophosphatase activity

Details:

Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.

GO Category:

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details:

Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.

GO Category:

GO:0019176

dihydroneopterin monophosphate phosphatase activity

Details:

Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.

GO Category:

GO:0019177

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details:

Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.

GO Category:

22404 DEXDc superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Motif-Guided Biclusters

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003676

GO:0005524

GO:0008026

GO:0004386

GO:0000810

GO:0004787

GO:0008722

GO:0008758

GO:0008796

GO:0008828

GO:0016462

GO:0016818

GO:0019176

GO:0019177

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