29705 18S_RNA_Rcl1p
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29705 chr_12 18S_RNA_Rcl1p 405135 406763 - 18S_RNA_Rcl1p

Synonyms

NCBI ID Ensembl Genomes exon ID
7445805 Thaps29705.2, Thaps29705.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0230
 0.24

Most Highly Correlated Transcripts

268145

PLN00040
0.9519

bd1709

(bd1709) NA
0.9506

268598

COG1094
0.9478

17145

WBS_methylT
0.9444

24016

Ebp2 superfamily
0.9416

6835

DUF947
0.9403

34027

SrmB
0.9394

261145

Lactamase_B superfamily
0.9388

29018

NMD3
0.9369

268596

CBF
0.935

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EPT_RTPC-like superfamily This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3'... - 328.888 1.04E-109 15 - 382 superfamily 260328
18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1; Members of this strictly eukaryotic protein family are not RNA 3... - 407.764 2.94E-140 20 - 405 multi-dom 234198

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22658 PHATRDRAFT_22658 223291 200589 63451 Cre09.g400367.t1.1 AT5G22100.1 487939

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0003963 -

GO:0003963

RNA-3'-phosphate cyclase activity

Details: 
Catalysis of the reaction: ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate.
GO Category: 
MF

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