23202 RsuA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23202 chr_6 RsuA 1359980 1361397 - RsuA

Synonyms

NCBI ID Ensembl Genomes exon ID
7442723 Thaps23202.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0268
 0.24

Most Highly Correlated Transcripts

6835

DUF947
0.9321

22334

hypothetical protein
0.9312

29705

18S_RNA_Rcl1p
0.9283

22498

DEXDc superfamily
0.9261

24016

Ebp2 superfamily
0.926

22404

DEXDc superfamily
0.9257

17145

WBS_methylT
0.9244

22099

hypothetical protein
0.9241

bd96

(bd96) eIF-3_zeta
0.9229

41419

(RT4) RpsD
0.9226

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 102.414 2.56E-26 265 - 414 superfamily 260207
RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation,... - 154.708 9.77E-44 70 - 424 multi-dom 224108

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10768 PHATRDRAFT_10768 232158 233520 466446 Not available Not available 503796

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

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