24679 PCIF1_WW superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24679	chr_13	PCIF1_WW superfamily	620196	622672	+	PCIF1_WW superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447840	Thaps24679.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0223

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0233	0.34	0.000038 0.14

Most Highly Correlated Transcripts

268744 SUA5 0.9102	268689 RRM6_RBM19_RRM5_MRD1 0.9021	7788 (Tp_CCHH23) regulator [Rayko] 0.8877	268145 PLN00040 0.8827	34027 SrmB 0.8755	23900 hypothetical protein 0.8752
25129 hypothetical protein 0.8742	bd1807 (bd1807) RRS1 superfamily 0.8735	24358 RAP 0.8708	32807 DEADc 0.8686

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PCIF1_WW superfamily		Phosphorylated CTD interacting factor 1 WW domain; This domain family is found in bacteria and...	-	145.168	4.86E-40	420 - 660	superfamily	256920

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43163	PHATRDRAFT_43163	179591	140445	440930	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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