26191 asnC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26191 chr_4 asnC 584364 586005 - asnC

Synonyms

NCBI ID Ensembl Genomes exon ID
7447475 Thaps26191.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0235
 0.25

Most Highly Correlated Transcripts

bd1869

(bd1869) SET
0.9232

21235

RpsA
0.915

31265

(CAT1_1) Mito_carr
0.906

27618

Ribosomal_L10
0.8983

39606

PRK05431
0.8902

8164

hypothetical protein
0.8899

bd1837

(bd1837) NA
0.8895

23462

hypothetical protein
0.8884

34698

Transcrip_reg
0.8845

bd392

(bd392) DEXDc
0.8791

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA... cl00268 426.983 3.57E-147 120 - 483 specific 238399
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 426.983 3.57E-147 120 - 483 superfamily 260313
EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli... cl19106 111.503 6.25E-30 24 - 108 specific 239813
Asp_Lys_Asn_RS_N superfamily Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (... - 111.503 6.25E-30 24 - 108 superfamily 267459
asnC asparaginyl-tRNA synthetase; Validated - 741.925 0 25 - 487 multi-dom 235176

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42247 PHATRDRAFT_42247 184752 317557 443485 Cre03.g193800.t1.1 AT4G17300.1 354926

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004815 GO:0005524 GO:0006422 GO:0004812 GO:0005737 GO:0006418 GO:0003676 GO:0004816 GO:0006421 -

GO:0004815

aspartate-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006422

aspartyl-tRNA aminoacylation

Details: 
The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004816

asparagine-tRNA ligase activity

Details: 
Catalysis of the reaction: L-asparagine + ATP + tRNA(Asn) = AMP + Asn-tRNA(Asn) + diphosphate + 2 H(+).
GO Category: 
MF

GO:0006421

asparaginyl-tRNA aminoacylation

Details: 
The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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