39606 PRK05431
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39606 chr_2 PRK05431 1628612 1629967 - PRK05431

Synonyms

NCBI ID Ensembl Genomes exon ID
7443089 Thaps39606.2, Thaps39606.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0090
 0.39

Most Highly Correlated Transcripts

24832

hypothetical protein
0.9192

8164

hypothetical protein
0.9102

261684

(LEUS) PLN02563
0.8999

262510

Alg6_Alg8 superfamily
0.898

26191

asnC
0.8902

261633

(CTS2) cysS
0.8898

4049

hypothetical protein
0.887

268398

PRK04173
0.884

bd392

(bd392) DEXDc
0.8825

270253

(NTT8) hypothetical protein
0.8802

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the... cl00268 448.932 1.35E-157 75 - 388 specific 238393
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 448.932 1.35E-157 75 - 388 superfamily 260313
PRK05431 seryl-tRNA synthetase; Provisional - 587.035 0 2 - 397 multi-dom 235461

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15374 PHATRDRAFT_15374 182285 202716 73074 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004828 GO:0006434 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004828

serine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser).
GO Category: 
MF

GO:0006434

seryl-tRNA aminoacylation

Details: 
The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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