262279 PT_UbiA_chlorophyll
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262279 chr_4 PT_UbiA_chlorophyll 1829880 1831273 + PT_UbiA_chlorophyll

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps262279.1, Thaps262279.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0224
 0.27

Most Highly Correlated Transcripts

4748

hypothetical protein
1

26573

(ChlH1) PLN03069
0.9463

719

PLN02433
0.9387

11337

hypothetical protein
0.933

575

PRK00062
0.9296

10233

COG1233
0.928

4700

hypothetical protein
0.9246

4718

SDR_a5
0.92

261232

URO-D
0.9173

2356

hypothetical protein
0.916

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PT_UbiA_chlorophyll Bacteriochlorophyll/chlorophyll synthetase; Chlorophyll synthase catalyzes the last step of... cl00337 422.023 2.77E-147 92 - 389 specific 260121
PT_UbiA superfamily UbiA family of prenyltransferases (PTases); Many characterized members of the UbiA... - 422.023 2.77E-147 92 - 389 superfamily 260365

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12807 PHATRDRAFT_12807 223502 55182 430815 Cre06.g294750.t1.2 AT3G51820.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004659 GO:0016021 GO:0030494 -

GO:0004659

prenyltransferase activity

Details: 
Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0030494

bacteriochlorophyll biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a bacteriochlorophyll, any of the chlorophylls of photosynthetic bacteria. They differ structurally from the chlorophylls of higher plants.
GO Category: 
BP

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