262775 RBFAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262775	chr_6	RBFA	500798	501442	-	RBFA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451171	Thaps262775.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0224

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0101	0.32	0.0013 0.0095

Most Highly Correlated Transcripts

6835 DUF947 0.937	28755 NSA2 0.9324	34413 RRM_ABT1_like 0.9322	41419 (RT4) RpsD 0.9288	22099 hypothetical protein 0.9281	24904 PIN_SF superfamily 0.9194
22498 DEXDc superfamily 0.9188	29705 18S_RNA_Rcl1p 0.9187	2392 hypothetical protein 0.9126	21725 Brix superfamily 0.9115

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RBFA		Ribosome-binding factor A; Ribosome-binding factor A.	cl00542	64.4017	7.80E-14	89 - 193	specific	251051
RBFA superfamily		Ribosome-binding factor A; Ribosome-binding factor A.	-	64.4017	7.80E-14	89 - 193	superfamily	260489

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_35267	PHATRDRAFT_35267	142380	183112	199701	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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