42000 PRK05912
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42000 chr_11a PRK05912 701181 702494 - PRK05912

Synonyms

NCBI ID Ensembl Genomes exon ID
7444493 Thaps42000.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0235
 0.25

Most Highly Correlated Transcripts

40034

thrS
0.8896

42307

GTP_HflX
0.8864

21235

RpsA
0.8765

34698

Transcrip_reg
0.8758

27618

Ribosomal_L10
0.8712

31451

rplO
0.8646

26190

SHMT
0.8584

37166

(RK17) rplQ
0.8526

268343

NA
0.8513

26191

asnC
0.8455

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase; Tyrosinyl-tRNA synthetase (TyrRS) catalytic... cl00015 321.093 1.34E-107 30 - 304 specific 173902
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 321.093 1.34E-107 30 - 304 superfamily 260139
PRK05912 tyrosyl-tRNA synthetase; Validated - 549.319 0 1 - 417 multi-dom 235645

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27323 PHATRDRAFT_27323 184961 218392 466998 Cre13.g606050.t1.2 AT3G02660.1 552811

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004831 GO:0006437 GO:0003723 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004831

tyrosine-tRNA ligase activity

Details: 
Catalysis of the reaction: L-tyrosine + ATP + tRNA(Tyr) = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + 2 H(+).
GO Category: 
MF

GO:0006437

tyrosyl-tRNA aminoacylation

Details: 
The process of coupling tyrosine to tyrosyl-tRNA, catalyzed by tyrosyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

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