4830 ADF_cofilin_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4830 chr_4 ADF_cofilin_like 2027865 2028666 - ADF_cofilin_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7451362 Thaps4830.2, Thaps4830.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0086

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

9238

hypothetical protein
0.8952

bd1161

(bd1161) NA
0.8929

36592

HMGB-UBF_HMG-box
0.8846

22301

(PMM1) PLN02423
0.8835

7967

2A0106
0.8825

1365

hypothetical protein
0.8753

bd718

(bd718) PRK10387
0.8727

bd439

(bd439) POLBc_alpha
0.8723

39173

ATP-synt_D
0.8636

263515

RimL
0.8602

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ADF_cofilin_like Cofilin, Destrin, and related actin depolymerizing factors; Actin depolymerization factor/cofilin-... cl15697 168.504 4.79E-54 3 - 132 specific 200442
ADF_gelsolin superfamily Actin depolymerization factor/cofilin- and gelsolin-like domains; Actin depolymerization factor/... - 168.504 4.79E-54 3 - 132 superfamily 265764

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15613 PHATRDRAFT_15613 210126 248251 73627 Cre07.g339050.t1.2 AT5G59880.1 354436

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003779 GO:0005622 -

GO:0003779

actin binding

Details: 
Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

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