Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1169(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1169
|Gene||Common Name||Description||Module membership|
|GSU0185||GSU0185||membrane protein, putative (VIMSS)||165, 195|
|GSU0217||noxC||nitroreductase family protein (NCBI)||110, 304|
|GSU0277||GSU0277||ABC transporter, ATP-binding/permease protein (VIMSS)||104, 304|
|GSU0294||GSU0294||HD domain protein (NCBI)||220, 304|
|GSU0364||cyd-1||cytochrome c3 (NCBI)||73, 165|
|GSU0372||GSU0372||sigma-54 dependent DNA-binding response regulator (VIMSS)||224, 304|
|GSU0374||hypA||hydrogenase expression/formation protein hupa (NCBI)||283, 304|
|GSU0375||gcvT||glycine cleavage system T protein (NCBI)||296, 304|
|GSU0406||GSU0406||TPR domain protein (VIMSS)||165, 312|
|GSU0694||GSU0694||HAD-superfamily hydrolase, subfamily IA, variant 1 (NCBI)||165, 173|
|GSU0698||GSU0698||PBS lyase HEAT-like repeat protein (NCBI)||296, 304|
|GSU0723||GSU0723||conserved hypothetical protein (VIMSS)||150, 165|
|GSU0727||GSU0727||lipoprotein, putative (VIMSS)||86, 165|
|GSU0899||GSU0899||conserved hypothetical protein (VIMSS)||69, 304|
|GSU0935||GSU0935||methyl-accepting chemotaxis protein, putative (VIMSS)||155, 304|
|GSU0943||GSU0943||hypothetical protein (VIMSS)||304, 335|
|GSU1062||GSU1062||cytochrome c, putative (NCBI)||165, 229|
|GSU1169||GSU1169||hypothetical protein (VIMSS)||165, 304|
|GSU1315||merA-1||mercuric reductase (NCBI)||296, 304|
|GSU1331||GSU1331||efflux transporter, RND family, MFP subunit (NCBI)||165, 341|
|GSU1333||GSU1333||hypothetical protein (VIMSS)||60, 165|
|GSU1372||GSU1372||3-hydroxyisobutyrate dehydrogenase family protein (VIMSS)||59, 304|
|GSU1532||nrd||conserved domain protein (NCBI)||45, 165|
|GSU1550||GSU1550||4-oxalocrotonate tautomerase family protein (VIMSS)||220, 304|
|GSU1554||GSU1554||GGDEF domain protein (NCBI)||165, 220|
|GSU1619||cheY-4||chemotaxis protein CheY (NCBI)||59, 304|
|GSU1713||GSU1713||conserved hyothetical protein, truncation (VIMSS)||70, 304|
|GSU2387||GSU2387||B12-binding domain (NCBI)||165, 234|
|GSU2463||GSU2463||glycosyl transferase, group 1 family protein (NCBI)||165, 252|
|GSU2538||nspC||carboxynorspermidine decarboxylase (NCBI)||15, 304|
|GSU2539||LYS1||saccharopine dehydrogenase (NCBI)||25, 304|
|GSU2540||GSU2540||transcriptional regulator, Cro/CI family (VIMSS)||181, 304|
|GSU2541||proC||pyrroline-5-carboxylate reductase (NCBI)||114, 304|
|GSU2577||GSU2577||hypothetical protein (VIMSS)||296, 304|
|GSU2646||GSU2646||hypothetical protein (VIMSS)||79, 304|
|GSU2657||cotA||spore coat protein A (NCBI)||165, 188|
|GSU2671||GSU2671||hypothetical protein (VIMSS)||82, 304|
|GSU2675||GSU2675||hypothetical protein (VIMSS)||85, 165|
|GSU2714||GSU2714||metallo-beta-lactamase family protein (VIMSS)||34, 165|
|GSU2744||GSU2744||major facilitator family transporter (VIMSS)||49, 304|
|GSU2745||GSU2745||ATPase, AAA family (VIMSS)||49, 304|
|GSU2746||GSU2746||conserved domain protein (NCBI)||269, 304|
|GSU2780||GSU2780||hypothetical protein (VIMSS)||165, 296|
|GSU3050||GSU3050||flagella basal body P-ring formation protein flgA, putative (VIMSS)||165, 226|
|GSU3151||GSU3151||conserved hypothetical protein (VIMSS)||165, 261|
|GSU3155||GSU3155||cytochrome c nitrite reductase, small subunit NrfH, putative (VIMSS)||78, 304|
|GSU3413||GSU3413||lipoprotein, putative (VIMSS)||34, 165|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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