Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1472(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1472
|Gene||Common Name||Description||Module membership|
|GSU0039||GSU0039||hypothetical protein (VIMSS)||66, 124|
|GSU0251||GSU0251||hypothetical protein (VIMSS)||124, 274|
|GSU0300||GSU0300||sigma-54 dependent DNA-binding response regulator, interruption-N (VIMSS)||124, 274|
|GSU0495||GSU0495||hypothetical protein (VIMSS)||57, 303|
|GSU0554||GSU0554||conserved hypothetical protein, interruption-N (NCBI)||33, 124|
|GSU0600||GSU0600||hypothetical protein (VIMSS)||90, 124|
|GSU1387||GSU1387||CRISPR-associated protein, CT1975 family (NCBI)||105, 303|
|GSU1389||GSU1389||CRISPR-associated protein, CT1974 family (NCBI)||105, 303|
|GSU1442||GSU1442||carbonic anhydrase family protein (VIMSS)||117, 303|
|GSU1471||GSU1471||HD domain protein (VIMSS)||124, 303|
|GSU1472||GSU1472||hypothetical protein (VIMSS)||124, 303|
|GSU1473||GSU1473||membrane protein, putative (VIMSS)||124, 303|
|GSU1474||GSU1474||DedA family protein (NCBI)||124, 303|
|GSU1475||GSU1475||RNA methyltransferase, TrmH family, group 1 (VIMSS)||124, 335|
|GSU1476||GSU1476||hypothetical protein (VIMSS)||105, 124|
|GSU1498||GSU1498||membrane protein, putative (VIMSS)||254, 303|
|GSU1499||GSU1499||membrane protein, putative (VIMSS)||105, 303|
|GSU1501||GSU1501||ABC transporter, ATP-binding protein (VIMSS)||103, 303|
|GSU1506||GSU1506||hypothetical protein (VIMSS)||254, 303|
|GSU1508||GSU1508||conserved hypothetical protein (VIMSS)||124, 299|
|GSU1509||GSU1509||glycosyl transferase, group 2 family protein (VIMSS)||88, 124|
|GSU1595||dut||deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI)||124, 158|
|GSU1666||GSU1666||iron-sulfur cluster-binding protein (NCBI)||77, 124|
|GSU1667||GSU1667||hypothetical protein (VIMSS)||88, 124|
|GSU1780||GSU1780||hypothetical protein (VIMSS)||33, 124|
|GSU1788||GSU1788||NHL repeat domain protein (VIMSS)||33, 124|
|GSU1853||GSU1853||membrane protein, putative (VIMSS)||66, 124|
|GSU1854||GSU1854||UDP-glucose/GDP-mannose dehydrogenase family protein (VIMSS)||66, 124|
|GSU1855||GSU1855||capsule polysaccharide export protein, putative (VIMSS)||66, 124|
|GSU1993||GSU1993||hypothetical protein (VIMSS)||124, 268|
|GSU2058||GSU2058||hypothetical protein (VIMSS)||34, 303|
|GSU2074||GSU2074||PPIC-type PPIASE domain protein (NCBI)||48, 303|
|GSU2141||GSU2141||ISGsu1, transposase, interruption (VIMSS)||124, 274|
|GSU2180||GSU2180||ISGsu1, transposase (VIMSS)||124, 274|
|GSU2181||GSU2181||hypothetical protein (VIMSS)||124, 274|
|GSU2182||GSU2182||hypothetical protein (VIMSS)||124, 274|
|GSU2467||GSU2467||hypothetical protein/integrase, fusion (VIMSS)||303, 324|
|GSU2468||GSU2468||hypothetical protein (VIMSS)||303, 324|
|GSU2470||GSU2470||hypothetical protein (VIMSS)||254, 303|
|GSU2546||GSU2546||hypothetical protein (VIMSS)||124, 210|
|GSU2670||GSU2670||transcriptional regulator, LuxR family (VIMSS)||105, 303|
|GSU2892||GSU2892||hypothetical protein (VIMSS)||124, 130|
|GSU3170||GSU3170||hypothetical protein (VIMSS)||103, 303|
|GSU3172||GSU3172||conserved hypothetical protein (VIMSS)||103, 303|
|GSU3174||hcP-2||hcp protein (NCBI)||117, 303|
|GSU3175||GSU3175||hypothetical protein (VIMSS)||103, 303|
|GSU3176||GSU3176||lysM domain protein (NCBI)||105, 303|
|GSU3187||GSU3187||ferredoxin family protein (VIMSS)||77, 124|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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