Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1710(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1710
|Gene||Common Name||Description||Module membership|
|GSU0009||GSU0009||sensory box histidine kinase (VIMSS)||217, 249|
|GSU0087||GSU0087||heterodisulfide reductase, iron-sulfur binding subunit, putative (VIMSS)||126, 214|
|GSU0089||GSU0089||heterodisulfide reductase subunit (VIMSS)||126, 291|
|GSU0090||GSU0090||heterodisulfide reductase subunit (VIMSS)||126, 214|
|GSU0091||GSU0091||heterodisulfide reductase subunit (VIMSS)||126, 214|
|GSU0213||GSU0213||radical SAM domain protein (NCBI)||126, 323|
|GSU0226||GSU0226||L-lactate permease, putative (VIMSS)||126, 164|
|GSU0273||GSU0273||radical SAM domain protein (NCBI)||249, 278|
|GSU0310||GSU0310||conserved hypothetical protein (VIMSS)||217, 249|
|GSU0526||GSU0526||conserved hypothetical protein (VIMSS)||126, 281|
|GSU0634||GSU0634||glycosyl transferase, group 1 family protein (VIMSS)||204, 249|
|GSU0825||GSU0825||pirin family protein (VIMSS)||126, 183|
|GSU0860||GSU0860||methylenetetrahydrofolate reductase family protein (VIMSS)||126, 144|
|GSU0862||folD-2||folD bifunctional protein (NCBI)||46, 126|
|GSU1053||GSU1053||sensory box protein (VIMSS)||122, 126|
|GSU1124||coaBC||phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (NCBI)||126, 295|
|GSU1136||GSU1136||5-formyltetrahydrofolate cyclo-ligase family protein (VIMSS)||249, 265|
|GSU1180||ftsH-1||cell division protein FtsH (NCBI)||112, 126|
|GSU1274||GSU1274||radical SAM domain protein (NCBI)||126, 208|
|GSU1276||carB||carbamoyl-phosphate synthase, large subunit (NCBI)||132, 249|
|GSU1298||GSU1298||methyl-accepting chemotaxis protein (VIMSS)||126, 183|
|GSU1377||GSU1377||3-hydroxybutyryl-CoA dehydratase (VIMSS)||11, 126|
|GSU1390||GSU1390||DNA-binding protein (NCBI)||88, 249|
|GSU1391||GSU1391||Fic family protein (NCBI)||249, 278|
|GSU1392||GSU1392||CRISPR-associated protein Cas1 (NCBI)||249, 336|
|GSU1393||GSU1393||CRISPR-associated protein, CT1978 family (NCBI)||163, 249|
|GSU1461||pyrF||orotidine 5`-phosphate decarboxylase (NCBI)||126, 233|
|GSU1535||recD||exodeoxyribonuclease V, alpha subunit (NCBI)||126, 336|
|GSU1679||GSU1679||hypothetical protein (VIMSS)||51, 249|
|GSU1753||GSU1753||lysyl-tRNA synthetase-related protein (NCBI)||163, 249|
|GSU1758||purM||phosphoribosylformylglycinamidine cyclo-ligase (VIMSS)||30, 249|
|GSU1864||ksgA||dimethyladenosine transferase (NCBI)||199, 249|
|GSU1865||gcp||metalloendopeptidase, putative, glycoprotease family (NCBI)||199, 249|
|GSU1866||GSU1866||phoH family protein (VIMSS)||249, 333|
|GSU1868||GSU1868||aminotransferase, class V (VIMSS)||249, 308|
|GSU1869||GSU1869||lipoprotein, putative (VIMSS)||199, 249|
|GSU2047||GSU2047||conserved hypothetical protein (VIMSS)||26, 126|
|GSU2050||secA||preprotein translocase, SecA subunit (NCBI)||91, 126|
|GSU2093||GSU2093||ABC transporter, ATP-binding protein (VIMSS)||217, 249|
|GSU2102||GSU2102||pyruvate formate-lyase-activating enzyme, putative (VIMSS)||126, 183|
|GSU2110||GSU2110||hypothetical protein (VIMSS)||102, 249|
|GSU2111||GSU2111||hypothetical protein (VIMSS)||102, 249|
|GSU2214||cheB-3||protein-glutamate methylesterase (NCBI)||126, 295|
|GSU2222||cheA-2||chemotaxis protein CheA (NCBI)||126, 222|
|GSU2264||lpxA||acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase (NCBI)||249, 277|
|GSU2272||GSU2272||lipoprotein, putative (VIMSS)||80, 126|
|GSU2879||leuB||3-isopropylmalate dehydrogenase (NCBI)||126, 233|
|GSU2889||GSU2889||hypothetical protein (VIMSS)||68, 249|
|GSU3062||GSU3062||radical SAM domain protein (NCBI)||42, 126|
|GSU3064||ftsA||cell division protein FtsA (NCBI)||249, 265|
|GSU3260||GSU3260||phosphoserine aminotransferase, putative (VIMSS)||35, 126|
|GSU3346||GSU3346||potassium uptake protein, Kup system (VIMSS)||249, 295|
|GSU3421||GSU3421||transcriptional regulator, Crp/Fnr family (VIMSS)||126, 164|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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