Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0087(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU0087
Module neighborhood information for GSU0087
|Gene||Common Name||Description||Module membership|
|GSU0023||GSU0023||TPR domain protein (NCBI)||111, 214|
|GSU0087||GSU0087||heterodisulfide reductase, iron-sulfur binding subunit, putative (VIMSS)||126, 214|
|GSU0088||GSU0088||heterodisulfide reductase subunit (VIMSS)||169, 214|
|GSU0089||GSU0089||heterodisulfide reductase subunit (VIMSS)||126, 291|
|GSU0090||GSU0090||heterodisulfide reductase subunit (VIMSS)||126, 214|
|GSU0091||GSU0091||heterodisulfide reductase subunit (VIMSS)||126, 214|
|GSU0092||GSU0092||heterodisulfide reductase subunit (NCBI)||127, 214|
|GSU0159||dapA||dihydrodipicolinate synthase (NCBI)||101, 214|
|GSU0213||GSU0213||radical SAM domain protein (NCBI)||126, 323|
|GSU0226||GSU0226||L-lactate permease, putative (VIMSS)||126, 164|
|GSU0526||GSU0526||conserved hypothetical protein (VIMSS)||126, 281|
|GSU0674||hcP-1||hydroxylamine reductase (RefSeq)||16, 214|
|GSU0792||GSU0792||conserved hypothetical protein (VIMSS)||22, 214|
|GSU0825||GSU0825||pirin family protein (VIMSS)||126, 183|
|GSU0860||GSU0860||methylenetetrahydrofolate reductase family protein (VIMSS)||126, 144|
|GSU0862||folD-2||folD bifunctional protein (NCBI)||46, 126|
|GSU0864||GSU0864||conserved hypothetical protein TIGR00251 (VIMSS)||101, 214|
|GSU0865||GSU0865||cell division protein DivIVA, putative (VIMSS)||111, 214|
|GSU1053||GSU1053||sensory box protein (VIMSS)||122, 126|
|GSU1124||coaBC||phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (NCBI)||126, 295|
|GSU1177||frdA||fumarate reductase, flavoprotein subunit (NCBI)||101, 214|
|GSU1180||ftsH-1||cell division protein FtsH (NCBI)||112, 126|
|GSU1274||GSU1274||radical SAM domain protein (NCBI)||126, 208|
|GSU1298||GSU1298||methyl-accepting chemotaxis protein (VIMSS)||126, 183|
|GSU1322||ccdA||cytochrome c biogenesis protein CcdA (NCBI)||153, 214|
|GSU1334||GSU1334||cytochrome c family protein (NCBI)||137, 214|
|GSU1377||GSU1377||3-hydroxybutyryl-CoA dehydratase (VIMSS)||11, 126|
|GSU1461||pyrF||orotidine 5`-phosphate decarboxylase (NCBI)||126, 233|
|GSU1535||recD||exodeoxyribonuclease V, alpha subunit (NCBI)||126, 336|
|GSU1555||GSU1555||sensory box histidine kinase/response regulator (VIMSS)||153, 214|
|GSU1628||GSU1628||phosphoglycerate kinase/triosephosphate isomerase (VIMSS)||214, 238|
|GSU1761||GSU1761||cytochrome c family protein (VIMSS)||76, 214|
|GSU2047||GSU2047||conserved hypothetical protein (VIMSS)||26, 126|
|GSU2049||argJ||glutamate N-acetyltransferase/amino-acid acetyltransferase (NCBI)||91, 214|
|GSU2050||secA||preprotein translocase, SecA subunit (NCBI)||91, 126|
|GSU2102||GSU2102||pyruvate formate-lyase-activating enzyme, putative (VIMSS)||126, 183|
|GSU2214||cheB-3||protein-glutamate methylesterase (NCBI)||126, 295|
|GSU2222||cheA-2||chemotaxis protein CheA (NCBI)||126, 222|
|GSU2255||GSU2255||conserved hypothetical protein (VIMSS)||28, 214|
|GSU2260||GSU2260||ABC transporter, ATP-binding protein, MsbA family (VIMSS)||28, 214|
|GSU2261||lpxB||lipid A disaccharide synthase (lpxB) (NCBI)||214, 262|
|GSU2262||degT||pleiotropic regulatory protein (NCBI)||28, 214|
|GSU2268||GSU2268||outer membrane protein, putative (VIMSS)||207, 214|
|GSU2269||GSU2269||ABC transporter, ATP-binding protein (VIMSS)||12, 214|
|GSU2272||GSU2272||lipoprotein, putative (VIMSS)||80, 126|
|GSU2731||ferA||polyheme membrane-associated cytochrome c (NCBI)||195, 214|
|GSU2732||GSU2732||cytochrome c family protein (NCBI)||195, 214|
|GSU2733||GSU2733||hypothetical protein (VIMSS)||195, 214|
|GSU2737||GSU2737||polyheme membrane-associated cytochrome c (VIMSS)||195, 214|
|GSU2739||GSU2739||hypothetical protein (VIMSS)||195, 214|
|GSU2879||leuB||3-isopropylmalate dehydrogenase (NCBI)||126, 233|
|GSU3062||GSU3062||radical SAM domain protein (NCBI)||42, 126|
|GSU3210||nadD||nicotinate (nicotinamide) nucleotide adenylyltransferase (NCBI)||160, 214|
|GSU3260||GSU3260||phosphoserine aminotransferase, putative (VIMSS)||35, 126|
|GSU3421||GSU3421||transcriptional regulator, Crp/Fnr family (VIMSS)||126, 164|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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