Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2595(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2595
|Gene||Common Name||Description||Module membership|
|GSU0010||GSU0010||sensory box histidine kinase/response regulator (VIMSS)||39, 295|
|GSU0249||GSU0249||membrane protein, putative (VIMSS)||55, 295|
|GSU0387||GSU0387||undecaprenol kinase, putative (VIMSS)||89, 295|
|GSU0443||GSU0443||ribonuclease D, putative (VIMSS)||89, 295|
|GSU0573||GSU0573||alcohol dehydrogenase, zinc-containing (VIMSS)||295, 322|
|GSU0719||GSU0719||hypothetical protein (VIMSS)||27, 311|
|GSU0827||GSU0827||hypothetical protein (VIMSS)||27, 53|
|GSU0828||GSU0828||metal ion efflux outer membrane protein family protein, putative (VIMSS)||27, 92|
|GSU0829||GSU0829||heavy metal efflux pump, CzcB family (VIMSS)||27, 53|
|GSU0830||GSU0830||heavy metal efflux pump, CzcA family (VIMSS)||27, 155|
|GSU0831||GSU0831||nitrogen regulatory protein P-II, putative (VIMSS)||27, 180|
|GSU1075||ruvC||crossover junction endodeoxyribonuclease RuvC (NCBI)||233, 295|
|GSU1124||coaBC||phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (NCBI)||126, 295|
|GSU1172||mviN||virulence factor mviN protein (NCBI)||295, 300|
|GSU1271||pyrB||aspartate carbamoyltransferase (NCBI)||39, 295|
|GSU1292||GSU1292||sensory box histidine kinase (VIMSS)||35, 295|
|GSU1307||ftn||ferritin (NCBI)||27, 85|
|GSU1444||GSU1444||conserved hypothetical protein (VIMSS)||103, 295|
|GSU1460||proS||prolyl-tRNA synthetase (NCBI)||233, 295|
|GSU1482||GSU1482||outer membrane efflux protein (VIMSS)||14, 295|
|GSU1642||GSU1642||conserved hypothetical protein (VIMSS)||27, 53|
|GSU1646||GSU1646||lipoprotein, putative (VIMSS)||27, 172|
|GSU1653||GSU1653||sigma-54 dependent DNA-binding response regulator (VIMSS)||146, 295|
|GSU1661||GSU1661||hypothetical protein (VIMSS)||27, 118|
|GSU1702||GSU1702||ROK family protein (VIMSS)||204, 295|
|GSU2053||GSU2053||indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative (VIMSS)||52, 295|
|GSU2092||GSU2092||conserved hypothetical protein (VIMSS)||142, 295|
|GSU2214||cheB-3||protein-glutamate methylesterase (NCBI)||126, 295|
|GSU2215||cheR-3||chemotaxis protein methyltransferase CheR (NCBI)||295, 323|
|GSU2231||GSU2231||conserved hypothetical protein (VIMSS)||262, 295|
|GSU2243||GSU2243||UDP-N-acetylglucosamine 2-epimerase (VIMSS)||295, 308|
|GSU2322||GSU2322||hypothetical protein (VIMSS)||13, 27|
|GSU2324||GSU2324||hypothetical protein (VIMSS)||27, 175|
|GSU2325||GSU2325||cation-transport ATPase, E1-E2 family (VIMSS)||27, 261|
|GSU2595||GSU2595||hypothetical protein (VIMSS)||27, 295|
|GSU2596||GSU2596||lipoprotein, putative (VIMSS)||179, 295|
|GSU2609||pilB||type IV pilus assembly protein, putative (NCBI)||227, 295|
|GSU2653||GSU2653||MATE efflux family protein (VIMSS)||27, 34|
|GSU2654||pdhA||pyruvate dehydrogenase complex E1 component, alpha subunit (NCBI)||27, 109|
|GSU2691||GSU2691||conserved hypothetical protein (VIMSS)||27, 85|
|GSU3008||cobS||cobalamin 5'-phosphate synthase (NCBI)||30, 295|
|GSU3018||GSU3018||conserved hypothetical protein (VIMSS)||27, 257|
|GSU3019||GSU3019||dehydrogenase, E1 component, alpha and beta subunits (NCBI)||27, 96|
|GSU3021||GSU3021||DegT/DnrJ/EryC1/StrS family protein (VIMSS)||27, 138|
|GSU3022||GSU3022||hypothetical protein (NCBI)||27, 138|
|GSU3024||GSU3024||hypothetical protein (VIMSS)||27, 138|
|GSU3025||GSU3025||heptosyltransferase family protein (VIMSS)||27, 272|
|GSU3264||GSU3264||membrane protein, putative (VIMSS)||295, 300|
|GSU3265||nirB||sulfite reductase, assimilatory-type (NCBI)||295, 327|
|GSU3326||GSU3326||conserved hypothetical protein (VIMSS)||27, 311|
|GSU3327||GSU3327||conserved hypothetical protein (VIMSS)||27, 85|
|GSU3344||GSU3344||hypothetical protein (VIMSS)||27, 279|
|GSU3346||GSU3346||potassium uptake protein, Kup system (VIMSS)||249, 295|
|GSU3396||GSU3396||transcriptional regulator, GntR family (VIMSS)||178, 295|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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