Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2973(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2973
|Gene||Common Name||Description||Module membership|
|GSU0124||GSU0124||competence protein F, putative (VIMSS)||59, 261|
|GSU0134||GSU0134||metallo-beta-lactamase family protein (NCBI)||38, 59|
|GSU0235||GSU0235||S1 RNA binding domain protein (VIMSS)||59, 298|
|GSU0258||GSU0258||hypothetical protein (VIMSS)||59, 222|
|GSU0269||GSU0269||conserved hypothetical protein (VIMSS)||59, 137|
|GSU0291||cheR||CheR methyltransferase, SAM binding domain protein, putative (NCBI)||36, 296|
|GSU0375||gcvT||glycine cleavage system T protein (NCBI)||296, 304|
|GSU0376||gcvH-1||glycine cleavage system H protein (NCBI)||153, 296|
|GSU0377||GSU0377||glycine cleavage system P protein, subunit 1 (VIMSS)||153, 296|
|GSU0378||GSU0378||glycine cleavage system P protein, subunit 2 (VIMSS)||153, 296|
|GSU0379||GSU0379||biotin/lipoate A/B protein ligase family protein (NCBI)||153, 296|
|GSU0380||lipA||lipoic acid synthetase (NCBI)||153, 296|
|GSU0381||GSU0381||lipoprotein, putative (VIMSS)||274, 296|
|GSU0382||GSU0382||conserved hypothetical protein (VIMSS)||153, 296|
|GSU0597||GSU0597||hypothetical protein (VIMSS)||45, 59|
|GSU0698||GSU0698||PBS lyase HEAT-like repeat protein (NCBI)||296, 304|
|GSU0855||GSU0855||membrane protein, TerC family (NCBI)||59, 71|
|GSU0920||GSU0920||hypothetical protein (NCBI)||82, 296|
|GSU0951||GSU0951||transcriptional regulator, TetR family (VIMSS)||82, 296|
|GSU1025||GSU1025||conserved domain protein (NCBI)||59, 160|
|GSU1299||cheW||purine-binding chemotaxis protein CheW (NCBI)||59, 157|
|GSU1315||merA-1||mercuric reductase (NCBI)||296, 304|
|GSU1326||recG||ATP-dependent DNA helicase RecG (NCBI)||296, 298|
|GSU1372||GSU1372||3-hydroxyisobutyrate dehydrogenase family protein (VIMSS)||59, 304|
|GSU1373||GSU1373||hypothetical protein (VIMSS)||59, 321|
|GSU1618||GSU1618||hypothetical protein (VIMSS)||59, 272|
|GSU1619||cheY-4||chemotaxis protein CheY (NCBI)||59, 304|
|GSU1620||GSU1620||iron-sulfur cluster binding protein, putative (VIMSS)||59, 272|
|GSU1621||GSU1621||conserved domain protein (VIMSS)||59, 272|
|GSU1622||GSU1622||L-lactate permease (VIMSS)||59, 272|
|GSU1623||GSU1623||glycolate oxidase subunit GlcD, putative (VIMSS)||59, 272|
|GSU1624||GSU1624||glycolate oxidase iron-sulfur subunit, putative (NCBI)||59, 272|
|GSU1671||GSU1671||response regulator/GGDEF domain protein (NCBI)||59, 224|
|GSU1680||GSU1680||conserved hypothetical protein (VIMSS)||59, 300|
|GSU1751||GSU1751||hypothetical protein (VIMSS)||59, 141|
|GSU2077||GSU2077||hypothetical protein (VIMSS)||59, 194|
|GSU2125||GSU2125||conserved domain protein (VIMSS)||59, 222|
|GSU2135||GSU2135||heavy metal efflux pump, CzcA family (VIMSS)||59, 113|
|GSU2218||cheW-6||chemotaxis protein CheW (NCBI)||59, 321|
|GSU2334||GSU2334||hypothetical protein (VIMSS)||59, 147|
|GSU2336||otsB||trehalose-phosphatase (NCBI)||296, 300|
|GSU2369||GSU2369||hypothetical protein (VIMSS)||59, 79|
|GSU2416||cheW-8||chemotaxis protein CheW (NCBI)||59, 79|
|GSU2450||GSU2450||conserved hypothetical protein (VIMSS)||51, 59|
|GSU2452||GSU2452||copper-translocating P-type ATPase (VIMSS)||40, 59|
|GSU2454||GSU2454||membrane protein, putative (VIMSS)||59, 144|
|GSU2466||GSU2466||hypothetical protein (VIMSS)||39, 296|
|GSU2477||GSU2477||TPR domain/radical SAM/B12 binding domain protein (NCBI)||59, 198|
|GSU2573||GSU2573||hypothetical protein (VIMSS)||104, 296|
|GSU2577||GSU2577||hypothetical protein (VIMSS)||296, 304|
|GSU2673||GSU2673||hypothetical protein (VIMSS)||144, 296|
|GSU2676||GSU2676||membrane protein, putative (VIMSS)||152, 296|
|GSU2780||GSU2780||hypothetical protein (VIMSS)||165, 296|
|GSU2781||GSU2781||efflux transporter, RND family, MFP subunit (NCBI)||130, 296|
|GSU2782||GSU2782||AcrB/AcrD/AcrF family protein (VIMSS)||278, 296|
|GSU2783||GSU2783||HDIG domain protein (VIMSS)||147, 296|
|GSU2973||GSU2973||lipoprotein, putative (VIMSS)||59, 296|
|GSU3053||fliA||RNA polymerase sigma factor for flagellar operon (NCBI)||296, 312|
|GSU3417||GSU3417||dioxygenase, putative (VIMSS)||21, 59|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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