Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0269(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU0269
|Gene||Common Name||Description||Module membership|
|GSU0040||GSU0040||conserved hypothetical protein (VIMSS)||137, 257|
|GSU0124||GSU0124||competence protein F, putative (VIMSS)||59, 261|
|GSU0134||GSU0134||metallo-beta-lactamase family protein (NCBI)||38, 59|
|GSU0235||GSU0235||S1 RNA binding domain protein (VIMSS)||59, 298|
|GSU0258||GSU0258||hypothetical protein (VIMSS)||59, 222|
|GSU0268||GSU0268||membrane protein, putative (VIMSS)||137, 155|
|GSU0269||GSU0269||conserved hypothetical protein (VIMSS)||59, 137|
|GSU0393||GSU0393||hypothetical protein (VIMSS)||44, 137|
|GSU0449||GSU0449||hypothetical protein (VIMSS)||96, 137|
|GSU0597||GSU0597||hypothetical protein (VIMSS)||45, 59|
|GSU0855||GSU0855||membrane protein, TerC family (NCBI)||59, 71|
|GSU1025||GSU1025||conserved domain protein (NCBI)||59, 160|
|GSU1299||cheW||purine-binding chemotaxis protein CheW (NCBI)||59, 157|
|GSU1334||GSU1334||cytochrome c family protein (NCBI)||137, 214|
|GSU1372||GSU1372||3-hydroxyisobutyrate dehydrogenase family protein (VIMSS)||59, 304|
|GSU1373||GSU1373||hypothetical protein (VIMSS)||59, 321|
|GSU1483||GSU1483||transcriptional regulator, MarR family (VIMSS)||137, 230|
|GSU1618||GSU1618||hypothetical protein (VIMSS)||59, 272|
|GSU1619||cheY-4||chemotaxis protein CheY (NCBI)||59, 304|
|GSU1620||GSU1620||iron-sulfur cluster binding protein, putative (VIMSS)||59, 272|
|GSU1621||GSU1621||conserved domain protein (VIMSS)||59, 272|
|GSU1622||GSU1622||L-lactate permease (VIMSS)||59, 272|
|GSU1623||GSU1623||glycolate oxidase subunit GlcD, putative (VIMSS)||59, 272|
|GSU1624||GSU1624||glycolate oxidase iron-sulfur subunit, putative (NCBI)||59, 272|
|GSU1662||GSU1662||hypothetical protein (VIMSS)||137, 270|
|GSU1671||GSU1671||response regulator/GGDEF domain protein (NCBI)||59, 224|
|GSU1680||GSU1680||conserved hypothetical protein (VIMSS)||59, 300|
|GSU1751||GSU1751||hypothetical protein (VIMSS)||59, 141|
|GSU1880||metK||S-adenosylmethionine synthetase (RefSeq)||137, 263|
|GSU1906||leuA||2-isopropylmalate synthase (NCBI)||137, 315|
|GSU2011||GSU2011||cysteine desulfurase (VIMSS)||137, 290|
|GSU2077||GSU2077||hypothetical protein (VIMSS)||59, 194|
|GSU2080||GSU2080||rod shape-determining protein MreD, putative (VIMSS)||137, 300|
|GSU2081||mreC||rod shape-determining protein MreC (NCBI)||7, 137|
|GSU2086||GSU2086||hypothetical protein (VIMSS)||137, 210|
|GSU2125||GSU2125||conserved domain protein (VIMSS)||59, 222|
|GSU2135||GSU2135||heavy metal efflux pump, CzcA family (VIMSS)||59, 113|
|GSU2218||cheW-6||chemotaxis protein CheW (NCBI)||59, 321|
|GSU2334||GSU2334||hypothetical protein (VIMSS)||59, 147|
|GSU2369||GSU2369||hypothetical protein (VIMSS)||59, 79|
|GSU2416||cheW-8||chemotaxis protein CheW (NCBI)||59, 79|
|GSU2450||GSU2450||conserved hypothetical protein (VIMSS)||51, 59|
|GSU2452||GSU2452||copper-translocating P-type ATPase (VIMSS)||40, 59|
|GSU2454||GSU2454||membrane protein, putative (VIMSS)||59, 144|
|GSU2477||GSU2477||TPR domain/radical SAM/B12 binding domain protein (NCBI)||59, 198|
|GSU2523||GSU2523||transcriptional regulator, LysR family (VIMSS)||137, 317|
|GSU2549||topA||DNA topoisomerase I (NCBI)||137, 231|
|GSU2970||GSU2970||conserved hypothetical protein (VIMSS)||80, 137|
|GSU2973||GSU2973||lipoprotein, putative (VIMSS)||59, 296|
|GSU2977||GSU2977||transaldolase, putative (VIMSS)||137, 243|
|GSU3122||GSU3122||metallo-beta-lactamase family protein (NCBI)||137, 257|
|GSU3123||GSU3123||aldehyde ferredoxin oxidoreductase domain protein (VIMSS)||137, 230|
|GSU3124||GSU3124||iron-sulfur cluster-binding protein (VIMSS)||137, 236|
|GSU3125||GSU3125||alcohol dehydrogenase, zinc-containing (VIMSS)||137, 230|
|GSU3126||GSU3126||oxidoreductase, aldo/keto reductase family (VIMSS)||137, 257|
|GSU3279||uvrC||excinuclease ABC, C subunit (NCBI)||137, 138|
|GSU3385||pckA||phosphoenolpyruvate carboxykinase (NCBI)||137, 276|
|GSU3417||GSU3417||dioxygenase, putative (VIMSS)||21, 59|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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