Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU3124(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU3124
Module neighborhood information for GSU3124
|Gene||Common Name||Description||Module membership|
|GSU0040||GSU0040||conserved hypothetical protein (VIMSS)||137, 257|
|GSU0268||GSU0268||membrane protein, putative (VIMSS)||137, 155|
|GSU0269||GSU0269||conserved hypothetical protein (VIMSS)||59, 137|
|GSU0288||GSU0288||PBS lyase HEAT-like repeat protein (NCBI)||210, 236|
|GSU0393||GSU0393||hypothetical protein (VIMSS)||44, 137|
|GSU0430||GSU0430||tail lysozyme, putative (NCBI)||86, 236|
|GSU0449||GSU0449||hypothetical protein (VIMSS)||96, 137|
|GSU0517||GSU0517||conserved domain protein (NCBI)||60, 236|
|GSU0537||GSU0537||sensory box/GGDEF family protein (VIMSS)||236, 290|
|GSU0730||GSU0730||hypothetical protein (VIMSS)||63, 236|
|GSU0832||GSU0832||lipoprotein, putative (VIMSS)||71, 236|
|GSU0838||GSU0838||hypothetical protein (VIMSS)||155, 236|
|GSU1038||GSU1038||sensory box histidine kinase/response regulator (VIMSS)||236, 269|
|GSU1096||pstB||phosphate ABC transporter, ATP-binding protein (NCBI)||16, 236|
|GSU1102||regX3||DNA-binding response regulator (NCBI)||115, 236|
|GSU1334||GSU1334||cytochrome c family protein (NCBI)||137, 214|
|GSU1417||GSU1417||response regulator (VIMSS)||78, 236|
|GSU1419||GSU1419||transcriptional regulator, Cro/CI family (VIMSS)||219, 236|
|GSU1483||GSU1483||transcriptional regulator, MarR family (VIMSS)||137, 230|
|GSU1662||GSU1662||hypothetical protein (VIMSS)||137, 270|
|GSU1676||GSU1676||hypothetical protein (VIMSS)||96, 236|
|GSU1697||GSU1697||membrane protein, putative (VIMSS)||236, 291|
|GSU1743||GSU1743||lipoprotein, putative (VIMSS)||166, 236|
|GSU1745||GSU1745||OmpA domain protein (VIMSS)||236, 265|
|GSU1858||GSU1858||IPT/TIG domain protein (VIMSS)||155, 236|
|GSU1880||metK||S-adenosylmethionine synthetase (RefSeq)||137, 263|
|GSU1906||leuA||2-isopropylmalate synthase (NCBI)||137, 315|
|GSU2011||GSU2011||cysteine desulfurase (VIMSS)||137, 290|
|GSU2080||GSU2080||rod shape-determining protein MreD, putative (VIMSS)||137, 300|
|GSU2081||mreC||rod shape-determining protein MreC (NCBI)||7, 137|
|GSU2086||GSU2086||hypothetical protein (VIMSS)||137, 210|
|GSU2354||GSU2354||transcriptional regulator, IclR family (VIMSS)||49, 236|
|GSU2523||GSU2523||transcriptional regulator, LysR family (VIMSS)||137, 317|
|GSU2549||topA||DNA topoisomerase I (NCBI)||137, 231|
|GSU2970||GSU2970||conserved hypothetical protein (VIMSS)||80, 137|
|GSU2977||GSU2977||transaldolase, putative (VIMSS)||137, 243|
|GSU3026||GSU3026||flagellar protein FlbD, putative (VIMSS)||110, 236|
|GSU3091||cvpA||CvpA family protein (NCBI)||16, 236|
|GSU3122||GSU3122||metallo-beta-lactamase family protein (NCBI)||137, 257|
|GSU3123||GSU3123||aldehyde ferredoxin oxidoreductase domain protein (VIMSS)||137, 230|
|GSU3124||GSU3124||iron-sulfur cluster-binding protein (VIMSS)||137, 236|
|GSU3125||GSU3125||alcohol dehydrogenase, zinc-containing (VIMSS)||137, 230|
|GSU3126||GSU3126||oxidoreductase, aldo/keto reductase family (VIMSS)||137, 257|
|GSU3239||cafA||ribonuclease G (NCBI)||96, 236|
|GSU3279||uvrC||excinuclease ABC, C subunit (NCBI)||137, 138|
|GSU3385||pckA||phosphoenolpyruvate carboxykinase (NCBI)||137, 276|
|GSU3416||GSU3416||hypothetical protein (VIMSS)||115, 236|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identification of functional enrichment for the module members is important in associating predicted motifs and regulatory influences with pathways. As described above, the network inference pipeline includes a functional enrichment module by which hypergeometric p-values are used to identify over representation of functional ontology terms among module members.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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