Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU3141(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU3141
|Gene||Common Name||Description||Module membership|
|GSU0015||GSU0015||PPIC-type PPIASE domain protein (NCBI)||4, 89|
|GSU0016||ppiD||PPIC-type PPIASE domain protein (NCBI)||4, 89|
|GSU0017||mfd||transcription-repair coupling factor (NCBI)||4, 262|
|GSU0018||GSU0018||transcriptional regulator, GntR family/aminotransferase class-I (VIMSS)||4, 89|
|GSU0019||GSU0019||pentapeptide repeat domain protein (VIMSS)||4, 89|
|GSU0071||GSU0071||hypothetical protein (VIMSS)||177, 216|
|GSU0103||GSU0103||sensory box histidine kinase (VIMSS)||200, 216|
|GSU0172||dnrV||conserved hypothetical protein (NCBI)||86, 216|
|GSU0253||GSU0253||sensory box histidine kinase (VIMSS)||4, 107|
|GSU0391||GSU0391||Outer membrane efflux family protein (VIMSS)||216, 230|
|GSU0401||GSU0401||methyl-accepting chemotaxis protein, putative (VIMSS)||216, 235|
|GSU0403||cheY-1||chemotaxis protein CheY (NCBI)||216, 235|
|GSU0452||GSU0452||sensor histidine kinase (VIMSS)||4, 160|
|GSU0752||GSU0752||transporter, putative (VIMSS)||216, 257|
|GSU1066||GSU1066||hypothetical protein (NCBI)||4, 157|
|GSU1167||GSU1167||conserved hypothetical protein (VIMSS)||4, 86|
|GSU1237||GSU1237||pyridine nucleotide-disulphide oxidoreductase family protein (NCBI)||4, 72|
|GSU1617||lexA-2||LexA repressor (NCBI)||45, 216|
|GSU1654||GSU1654||response regulator, putative (NCBI)||4, 140|
|GSU1683||GSU1683||conserved hypothetical protein (VIMSS)||4, 235|
|GSU1835||glnA||glutamine synthetase, type I (NCBI)||4, 72|
|GSU1836||GSU1836||nitrogen regulatory protein P-II (VIMSS)||4, 72|
|GSU1995||GSU1995||hypothetical protein (VIMSS)||193, 216|
|GSU2060||GSU2060||pmbA protein, putative (VIMSS)||4, 88|
|GSU2061||argA||acetyltransferase, GNAT family (NCBI)||4, 88|
|GSU2062||GSU2062||GGDEF domain protein (VIMSS)||4, 88|
|GSU2063||GSU2063||HD domain protein (NCBI)||4, 88|
|GSU2192||cbbZ||phosphoglycolate phosphatase (NCBI)||4, 40|
|GSU2193||GSU2193||conserved hypothetical protein (VIMSS)||4, 193|
|GSU2473||vapB||virulence associated protein B (NCBI)||193, 216|
|GSU2491||GSU2491||major facilitator family transporter (VIMSS)||216, 331|
|GSU2560||GSU2560||hypothetical protein (NCBI)||140, 216|
|GSU2663||GSU2663||lipoprotein, putative (VIMSS)||216, 273|
|GSU2712||GSU2712||hypothetical protein (VIMSS)||4, 12|
|GSU2713||GSU2713||conserved hypothetical protein (VIMSS)||4, 133|
|GSU2762||glpK||glycerol kinase (NCBI)||4, 252|
|GSU2763||GSU2763||conserved hypothetical protein (VIMSS)||4, 66|
|GSU2809||GSU2809||transcriptional regulator, Fur family (VIMSS)||193, 216|
|GSU2968||GSU2968||hypothetical protein (VIMSS)||85, 216|
|GSU3036||fliS||flagellar protein FliS (NCBI)||150, 216|
|GSU3114||GSU3114||hypothetical protein (VIMSS)||4, 100|
|GSU3139||GSU3139||conserved hypothetical protein (VIMSS)||53, 216|
|GSU3140||GSU3140||peptidase, M1 family protein (NCBI)||4, 100|
|GSU3141||GSU3141||hypothetical protein (VIMSS)||4, 216|
|GSU3142||GSU3142||phospho-2-dehydro-3-deoxyheptonate aldolase (NCBI)||4, 216|
|GSU3461||GSU3461||thioesterase family protein (NCBI)||216, 235|
|GSU3462||GSU3462||lipoprotein, putative (VIMSS)||187, 216|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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