Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG1158G(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for VNG1158G
Module neighborhood information for VNG1158G
|Gene||Common Name||Description||Module membership|
|VNG0094C||hypothetical protein VNG0094C||283|
|VNG0233H||hypothetical protein VNG0233H||191, 283|
|VNG0320H||hypothetical protein VNG0320H||170, 283|
|VNG0394C||hypothetical protein VNG0394C||191, 283|
|VNG0582C||hypothetical protein VNG0582C||16, 283|
|VNG0583G||cyb||cytochrome b6||119, 283|
|VNG0665G||coxB1||cytochrome c oxidase subunit II||40, 283|
|VNG0768H||hypothetical protein VNG0768H||71, 283|
|VNG0804C||hypothetical protein VNG0804C||261, 283|
|VNG0849C||hypothetical protein VNG0849C||100, 283|
|VNG0892H||hypothetical protein VNG0892H||195, 283|
|VNG0931G||acaB2||3-ketoacyl-CoA thiolase||50, 283|
|VNG0941C||hypothetical protein VNG0941C||262, 283|
|VNG0942G||cheW2||hypothetical protein VNG0942G||191, 283|
|VNG0954C||hypothetical protein VNG0954C||7, 278, 283|
|VNG0978H||hypothetical protein VNG0978H||261, 283|
|VNG0992H||hypothetical protein VNG0992H||229, 283|
|VNG0995H||hypothetical protein VNG0995H||35, 283|
|VNG1029C||hypothetical protein VNG1029C||59, 283|
|VNG1085H||hypothetical protein VNG1085H||229, 283|
|VNG1086C||hypothetical protein VNG1086C||191, 283|
|VNG1087C||hypothetical protein VNG1087C||120, 283|
|VNG1088C||hypothetical protein VNG1088C||199, 283|
|VNG1149Cm||metallo-beta-lactamase superfamily hydrolase||2, 16, 23, 33|
|VNG1157G||rpl7ae||50S ribosomal protein L7Ae||191, 283|
|VNG1158G||rps28e||30S ribosomal protein S28e||23, 283|
|VNG1160G||ndk||nucleoside diphosphate kinase||23, 283|
|VNG1169C||hypothetical protein VNG1169C||23, 66, 82, 137, 161, 165, 180|
|VNG1170G||rpl21e||50S ribosomal protein L21e||23, 66, 82, 137, 161, 165|
|VNG1190G||sod1||superoxide dismutase||78, 283|
|VNG1213C||hypothetical protein VNG1213C||84, 283|
|VNG1294G||slyD||peptidyl-prolyl cis-trans isomerase||23, 67, 184|
|VNG1689G||rpl3p||50S ribosomal protein L3P||1, 10, 23, 39, 66, 82, 99, 137, 180|
|VNG1691G||rplW||50S ribosomal protein L23P||1, 10, 23, 33, 39, 66, 82, 99, 137, 161, 165, 180|
|VNG1695G||rpl22p||50S ribosomal protein L22P||1, 10, 23, 33, 39, 66, 82, 99, 137, 161, 165, 180|
|VNG1697G||rps3p||30S ribosomal protein S3P||1, 10, 23, 33, 39, 66, 82, 99, 137, 165, 180|
|VNG1699C||ribonuclease P protein component 1||1, 10, 23, 39, 99, 180, 227|
|VNG1701G||rpl14p||50S ribosomal protein L14P||1, 10, 23, 137, 221|
|VNG1702G||rpl24p||50S ribosomal protein L24P||1, 10, 23, 39, 66, 82, 99, 137, 165|
|VNG1705G||rpl5p||50S ribosomal protein L5P||1, 10, 23, 39, 99, 180|
|VNG1706G||rps14P||30S ribosomal protein S14P||10, 23, 221|
|VNG1709G||rpl6p||50S ribosomal protein L6P||1, 10, 23, 39, 66, 99, 137, 165, 180|
|VNG1713G||rpl19e||50S ribosomal protein L19e||1, 10, 23, 33, 39, 66, 99, 137, 180|
|VNG1718G||rpl15p||50S ribosomal protein L15P||1, 10, 23, 39, 99, 180|
|VNG1719G||secY||preprotein translocase subunit SecY||1, 10, 23, 39, 99|
|VNG1768G||eif5a||translation initiation factor IF-5A||23, 24, 40, 59|
|VNG2139G||atpA||V-type ATP synthase subunit A||23, 24, 33, 39, 45, 67, 114, 124, 227|
|VNG2141G||atpC||V-type ATP synthase subunit C||23, 39, 45, 67, 114, 124, 227|
|VNG2143G||atpK||H+-transporting ATP synthase subunit K||2, 19, 23, 24, 45, 67, 75, 114, 124, 227|
|VNG2144G||atpI||H+-transporting ATP synthase subunit I||19, 23, 24, 45, 67, 75, 124, 227|
|VNG2574G||can||aconitate hydratase||23, 29|
|VNG2575G||rimI||Pab N-terminal acetyltransferase||23|
|VNG2648G||rps10p||30S ribosomal protein S10P||2, 3, 16, 23, 24, 29, 40, 110|
|VNG2654Gm||EEF2||elongation factor EF-2||2, 23, 110|
|VNG2658G||rps12P||30S ribosomal protein S12P||23, 39, 40, 45, 98, 110, 137|
|VNG6294G||perA||peroxidase / catalase||23, 24, 29, 52|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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