Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG0954C(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for VNG0954C
Module neighborhood information for VNG0954C
|Gene||Common Name||Description||Module membership|
|VNG0094C||hypothetical protein VNG0094C||283|
|VNG0192G||ftsZ2||cell division protein FtsZ||2, 3, 7, 12, 16, 49, 50, 71, 78, 79, 123|
|VNG0194H||hypothetical protein VNG0194H||3, 7, 12, 16, 50, 79, 123|
|VNG0207H||hypothetical protein VNG0207H||2, 3, 7, 12, 16, 49, 67, 71, 78, 79, 113, 123|
|VNG0208H||hypothetical protein VNG0208H||2, 3, 7, 12, 16, 24, 29, 49, 67, 71, 78, 79, 113, 123|
|VNG0209H||hypothetical protein VNG0209H||2, 3, 7, 12, 16, 24, 29, 49, 67, 71, 78, 79, 113, 123|
|VNG0233H||hypothetical protein VNG0233H||191, 283|
|VNG0259G||ipp||inorganic pyrophosphatase||7, 12, 16, 79, 109|
|VNG0261H||hypothetical protein VNG0261H||7, 12, 16, 25, 49, 50, 55, 79, 109, 113|
|VNG0320H||hypothetical protein VNG0320H||170, 283|
|VNG0321G||ids||Ids||7, 25, 50, 55|
|VNG0394C||hypothetical protein VNG0394C||191, 283|
|VNG0524G||yurY||ABC transporter ATP-binding protein||2, 3, 7, 12, 16, 71, 113, 225|
|VNG0525C||hypothetical protein VNG0525C||7, 12, 71, 78, 113, 225|
|VNG0527C||hypothetical protein VNG0527C||2, 3, 7, 12, 16, 71, 78, 79, 113, 123, 225|
|VNG0582C||hypothetical protein VNG0582C||16, 283|
|VNG0583G||cyb||cytochrome b6||119, 283|
|VNG0665G||coxB1||cytochrome c oxidase subunit II||40, 283|
|VNG0768H||hypothetical protein VNG0768H||71, 283|
|VNG0796G||cgs||cystathionine gamma synthase/lyase||7, 50|
|VNG0804C||hypothetical protein VNG0804C||261, 283|
|VNG0849C||hypothetical protein VNG0849C||100, 283|
|VNG0892H||hypothetical protein VNG0892H||195, 283|
|VNG0931G||acaB2||3-ketoacyl-CoA thiolase||50, 283|
|VNG0940Gm||ACS3||Acetyl-CoA synthetase||7, 19, 24, 25, 29, 49|
|VNG0941C||hypothetical protein VNG0941C||262, 283|
|VNG0942G||cheW2||hypothetical protein VNG0942G||191, 283|
|VNG0946G||minD1||cell division inhibitor||7|
|VNG0949G||gspE3||type II secretion system protein||7|
|VNG0954C||hypothetical protein VNG0954C||7, 278, 283|
|VNG0955G||fapE||flagella-like protein E||7, 16, 25, 50, 100, 291|
|VNG0960G||flaB1||flagellin B1||2, 3, 7, 12, 16, 49, 78, 79, 100, 113, 123|
|VNG0961G||flaB2||flagellin B2||2, 3, 7, 12, 16, 49, 78, 79, 100, 113, 123, 291|
|VNG0962G||flaB3||flagellin B3||2, 3, 7, 12, 16, 49, 78, 100, 113, 123|
|VNG0974G||cheY||hypothetical protein VNG0974G||7, 55, 61, 184|
|VNG0976G||cheW1||chemotaxis protein||7, 55|
|VNG0978H||hypothetical protein VNG0978H||261, 283|
|VNG0992H||hypothetical protein VNG0992H||229, 283|
|VNG0995H||hypothetical protein VNG0995H||35, 283|
|VNG1029C||hypothetical protein VNG1029C||59, 283|
|VNG1085H||hypothetical protein VNG1085H||229, 283|
|VNG1086C||hypothetical protein VNG1086C||191, 283|
|VNG1087C||hypothetical protein VNG1087C||120, 283|
|VNG1088C||hypothetical protein VNG1088C||199, 283|
|VNG1125G||korB||KorB||7, 12, 24, 29|
|VNG1128G||korA||KorA||3, 7, 12, 24, 29, 49, 71, 78, 113|
|VNG1157G||rpl7ae||50S ribosomal protein L7Ae||191, 283|
|VNG1158G||rps28e||30S ribosomal protein S28e||23, 283|
|VNG1160G||ndk||nucleoside diphosphate kinase||23, 283|
|VNG1190G||sod1||superoxide dismutase||78, 283|
|VNG1213C||hypothetical protein VNG1213C||84, 283|
|VNG1308G||sdhB||hypothetical protein VNG1308G||2, 278|
|VNG1933G||ftsZ3||cell division protein||7, 25, 61, 227|
|VNG2122G||ilvE2||branched-chain amino acid aminotransferase||7, 19, 29, 49, 71, 75, 78|
|VNG2226G||cctA||thermosome subunit alpha||3, 7, 12, 29, 49, 50, 52, 78, 113|
|VNG2499G||gcdH||glutaryl-CoA dehydrogenase||7, 24, 25, 50, 61, 78|
|VNG2539H||hypothetical protein VNG2539H||7, 29, 78|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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