Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP1466(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 6 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP1466
Module neighborhood information for MMP1466
|Gene||Common Name||Description||Module membership|
|MMP0014||truD||tRNA pseudouridine synthase D||66, 107|
|MMP0015||hypothetical protein MMP0015||66, 107|
|MMP0105||hypothetical protein MMP0105||4, 107|
|MMP0106||hypothetical protein MMP0106||107, 140|
|MMP0108||ABC-type Iron(III)-binding periplasmic protein precursor||41, 67, 95|
|MMP0118||beta-lactamase domain-containing protein||115, 133|
|MMP0170||cofF||RimK family alpha-L-glutamate ligase||104, 133|
|MMP0178||purQ||phosphoribosylformylglycinamidine synthase I||95, 143|
|MMP0186||hypothetical protein MMP0186||104, 133|
|MMP0212||glycyl-tRNA synthetase||81, 107|
|MMP0216||cation transport ATPase||4, 41, 95|
|MMP0253||acd||CoA-binding domain-containing protein||95, 124|
|MMP0271||putative ATP binding nickel incorporation protein||21, 95|
|MMP0354||putative oligosaccharide transporter||80, 95|
|MMP0479||hypothetical protein MMP0479||4, 95|
|MMP0637||ArsR family transcriptional regulator||24, 107|
|MMP0844||hypothetical protein MMP0844||66, 133|
|MMP0849||L-lysine/ homoserine-homoserine lactone exporter family protein||95, 117|
|MMP0861||kamA||lysine 2,3-aminomutase||41, 95|
|MMP0862||yodP||GCN5-like N-acetyltransferase||41, 95|
|MMP0873||hypothetical protein MMP0873||95, 107|
|MMP0917||dapF||diaminopimelate epimerase||107, 136|
|MMP0930||cheR||chemotaxis protein CheR||98, 133|
|MMP0935||hypothetical protein MMP0935||107, 126|
|MMP0936||aroE||shikimate 5-dehydrogenase||66, 107|
|MMP0999||hypothetical protein MMP0999||95, 140|
|MMP1000||hypothetical protein MMP1000||4, 95|
|MMP1038||atpH||A1A0 ATPase subunit H||107, 135|
|MMP1039||atpI||V-type ATP synthase subunit I||107, 135|
|MMP1040||atpK||V-type ATP synthase subunit K||107, 135|
|MMP1041||atpE||A1A0 ATPase subunit IE||107, 135|
|MMP1042||atpC||V-type ATP synthase subunit C||107, 135|
|MMP1043||atpF||V-type ATP synthase subunit F||107, 135|
|MMP1044||atpA||V-type ATP synthase subunit A||107, 135|
|MMP1045||atpB||V-type ATP synthase subunit B||107, 135|
|MMP1046||atpD||V-type ATP synthase subunit D||107, 135|
|MMP1047||hypothetical protein MMP1047||107, 135|
|MMP1066||putative molybdenum cofactor biosynthesis protein MoaC||28, 133|
|MMP1090||NAD-dependent epimerase/dehydratase||66, 133|
|MMP1099||phosphate transporter PhoU||66, 89, 95|
|MMP1150||mtaA||uroporphyrinogen decarboxylase||4, 41, 95|
|MMP1190||FKBP-type peptidylprolyl isomerase||35, 107|
|MMP1199||phosphate transporter PhoU||95, 133|
|MMP1210||hypothetical protein MMP1210||89, 95|
|MMP1212||acetyl-CoA acetyltransferase||89, 95|
|MMP1219||putative dinG ATP-dependent helicase||95, 107|
|MMP1230||DNA polymerase, beta-like region||98, 133|
|MMP1231||HAD family hydrolase fragment||98, 133|
|MMP1232||PP-loop domain-containing protein||95, 104|
|MMP1337||hydrogenase maturation protease||95, 107|
|MMP1429||rpm||DNA-directed RNA polymerase subunit M||95, 107|
|MMP1454||ehaG||hypothetical protein MMP1454||66, 117, 133|
|MMP1455||ehaH||putative transmembrane subunit of a hydrogenase||66, 133|
|MMP1456||ehaI||hypothetical protein MMP1456||66, 117, 133|
|MMP1457||ehaJ||energy conserving hydrogenase A integral membrane subunit||66, 133|
|MMP1458||ehaK||hypothetical protein MMP1458||66, 133|
|MMP1459||ehaL||hypothetical protein MMP1459||66, 117, 133|
|MMP1460||ehaM||hypothetical protein MMP1460||66, 133|
|MMP1461||ehaN||energy conserving hydrogenase A small subunit||117, 133|
|MMP1462||ehaO||energy conserving hydrogenase A large subunit||66, 133|
|MMP1464||ehaQ||hypothetical protein MMP1464||107, 133|
|MMP1465||ehaR||hypothetical protein MMP1465||107, 133|
|MMP1466||ehaS||putative CBS domain-containing signal transduction protein||95, 107, 133|
|MMP1467||ehaT||hypothetical protein MMP1467||28, 129, 133|
|MMP1612||hypothetical protein MMP1612||41, 95|
|MMP1630||ABC transporter ATPase||129, 133|
|MMP1651||modA||molybdenum ABC transporter periplasmic molybdate-binding protein||41, 95|
|MMP1652||molybdate ABC transporter periplasmic substrate-binding protein||89, 95|
|Unanno_59||None||28, 104, 133|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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