Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP0106(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for MMP0106
|Gene||Common Name||Description||Module membership|
|MMP0014||truD||tRNA pseudouridine synthase D||66, 107|
|MMP0015||hypothetical protein MMP0015||66, 107|
|MMP0046||hypothetical protein MMP0046||20, 51, 140|
|MMP0074||hypothetical protein MMP0074||51, 140|
|MMP0105||hypothetical protein MMP0105||4, 107|
|MMP0106||hypothetical protein MMP0106||107, 140|
|MMP0133||guaB||inosine-5'-monophosphate dehydrogenase||25, 120, 140|
|MMP0210||hypothetical protein MMP0210||58, 140|
|MMP0212||glycyl-tRNA synthetase||81, 107|
|MMP0220||Sodium/proline symporter-related||70, 140|
|MMP0224||hemL||glutamate-1-semialdehyde aminotransferase||60, 130, 140|
|MMP0282||purE||phosphoribosylaminoimidazole carboxylase catalytic subunit||7, 140|
|MMP0319||cbiL||precorrin-2 C-20 methyltransferase||24, 140, 141, 149|
|MMP0346||2-hydroxyglutaryl-CoA dehydratase subunit D-like protein||7, 140|
|MMP0356||group 1 glycosyl transferase||80, 139, 140|
|MMP0530||hypothetical protein MMP0530||92, 140|
|MMP0531||hypothetical protein MMP0531||106, 140|
|MMP0541||serB||phosphoserine phosphatase SerB||7, 40, 139, 140|
|MMP0550||amino acid ABC transporter periplasmic protein||81, 140|
|MMP0554||SAM-binding motif-containing protein||129, 140|
|MMP0588||dph5||diphthine synthase||25, 81, 140|
|MMP0609||pth2||peptidyl-tRNA hydrolase||66, 140|
|MMP0637||ArsR family transcriptional regulator||24, 107|
|MMP0705||wbpI||UDP-N-acetylglucosamine 2-epimerase||80, 140|
|MMP0707||sodium/hydrogen exchanger||87, 109, 140|
|MMP0865||aminotransferase (subgroup II) adenosylmethionine-8-amino-7-oxononanoate aminotransferase||115, 140|
|MMP0873||hypothetical protein MMP0873||95, 107|
|MMP0878||ribonuclease P-like protein||25, 87, 140|
|MMP0880||aksF||isopropylmalate/isohomocitrate dehydrogenase||24, 60, 140, 143|
|MMP0917||dapF||diaminopimelate epimerase||107, 136|
|MMP0935||hypothetical protein MMP0935||107, 126|
|MMP0936||aroE||shikimate 5-dehydrogenase||66, 107|
|MMP0999||hypothetical protein MMP0999||95, 140|
|MMP1038||atpH||A1A0 ATPase subunit H||107, 135|
|MMP1039||atpI||V-type ATP synthase subunit I||107, 135|
|MMP1040||atpK||V-type ATP synthase subunit K||107, 135|
|MMP1041||atpE||A1A0 ATPase subunit IE||107, 135|
|MMP1042||atpC||V-type ATP synthase subunit C||107, 135|
|MMP1043||atpF||V-type ATP synthase subunit F||107, 135|
|MMP1044||atpA||V-type ATP synthase subunit A||107, 135|
|MMP1045||atpB||V-type ATP synthase subunit B||107, 135|
|MMP1046||atpD||V-type ATP synthase subunit D||107, 135|
|MMP1047||hypothetical protein MMP1047||107, 135|
|MMP1068||K+-dependent Na+/Ca+ exchanger related-protein:Sodium/calcium exchanger membrane region||81, 140|
|MMP1106||hypothetical protein MMP1106||81, 137, 140|
|MMP1190||FKBP-type peptidylprolyl isomerase||35, 107|
|MMP1219||putative dinG ATP-dependent helicase||95, 107|
|MMP1312||hypothetical protein MMP1312||52, 140|
|MMP1326||rpoN||DNA-directed RNA polymerase subunit N||103, 118, 140|
|MMP1337||hydrogenase maturation protease||95, 107|
|MMP1353||hypothetical protein MMP1353||81, 140|
|MMP1356||PP-loop domain-containing protein||25, 129, 139, 140, 149|
|MMP1357||hypothetical protein MMP1357||140, 149|
|MMP1362||rpoB1||DNA-directed RNA polymerase subunit B'||63, 130, 140|
|MMP1425||tRNA 2'-O-methylase||25, 87, 140|
|MMP1426||dcd||bifunctional dCTP deaminase/dUTP diphosphatase||16, 112, 140|
|MMP1429||rpm||DNA-directed RNA polymerase subunit M||95, 107|
|MMP1438||hypothetical protein MMP1438||14, 140|
|MMP1464||ehaQ||hypothetical protein MMP1464||107, 133|
|MMP1465||ehaR||hypothetical protein MMP1465||107, 133|
|MMP1466||ehaS||putative CBS domain-containing signal transduction protein||95, 107, 133|
|MMP1540||hypothetical protein MMP1540||24, 140|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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