Rv0678

Rv0678 () is predicted to be co-regulated in modules bicluster_0300 with residual 0.49 and bicluster_0397 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 1.40 for bicluster_0300 and 0.00 and 0.00 for bicluster_0397 respectively.

These modules are enriched for following go terms: tricarboxylic acid cycle enzyme complex, acid-thiol ligase activity, ligase activity, forming carbon-sulfur b... nitrogen compound metabolic process, carbon-oxygen lyase activity.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 31 - 40 of 268
Gene Target Differential Expression Distance Expression pvalue Type
\Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase) \\\""
No -33 0.16 0.427286 CDS
\Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase) \\\""
No -66 0.16 0.427286 Internal.TSS
No -84 -0.1 0.735809 CDS
Transcriptional regulator, TetR family
No -39 0.29 0.634165 CDS
Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30)
No -99 0.68 0.110521 Primary.TSS
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
No -25 0.25 0.393192 Antisense.TSS
POSSIBLE MYCOLIC ACID SYNTHASE UMAA1
No -136 0.25 0.361522 Primary.TSS
Phosphoglycerate mutase (EC 5.4.2.1)
No -28 -0.21 0.250032 Primary.TSS
GMC-type oxidoreductase
No 47 0.41 0.172725 CDS
Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV
No 22 -0.29 0.552884 Primary.TSS
not assigned to any KEGG Pathway.
GO:0006355

regulation of transcription, DNA-dependent

regulation of transcription, DNA-dependent

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription.
GO Category: 
biological_process
15
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D24I 3 24 26.60 3.27 I
D28I 4 28 30.61 3.93 I
D21I 4 21 23.23 4.45 I
D17I 3 17 19.15 4.72 I
D14I 4 14 15.63 8.46 I
D5I 9 5 6.00 9.29 I
D5U 17 5 6.00 10.09 U
D7I 18 7 8.14 10.70 I
D3U 3 3 3.83 12.65 U
D28U 4 28 30.61 12.89 U
D7U 19 7 8.14 13.18 U
D0U 27 0 0.00 13.19 U
D3I 3 3 3.83 13.23 I
D21U 4 21 23.23 13.42 U
D14U 4 14 15.63 13.79 U
D24U 3 24 26.60 13.79 U
D17U 3 17 19.15 14.16 U